Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2413

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 572

Length: 954
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30


Found at i:74 original size:46 final size:46

Alignment explanation


    Indices: 1--954  Score: 1210
    Period size: 46  Copynumber: 20.7  Consensus size: 46

                           **                        *    
          1 GGGGATCGAAGATAGTTGATCTTGTCTTCCTGTATTTGGCATCGGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

                 *         * *    *      *                
         47 GGGGAACGAAGATAGTAAATCTGGTCTTCTTGTATTTGGCAGCGGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

                      *              *                    
         93 GGGGATCGAATATAGCAGATCTTGTTTTCCTGTATTTGGCAGCGGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

                          *                               
        139 GGGGATCGAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

            *             *                   *     *    * 
        185 AGGGATAC-AAGATCGCAGATCTTGTCTTCCTGTCTTTGGTAGCGAA
          1 GGGGAT-CGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

            *             *   *      *                    
        231 AGGGATCGAAGATATCAGTTCTTGTGTTCCTGTATTTGGCAGCGGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

                          *                             * 
        277 GGGGATCGAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGAA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

            *                               * *            
        323 AGGGATAC-AAGATAGCAGATCTTGTCTTCCTATTTTTGGCAGCGGA
          1 GGGGAT-CGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

              *      *      *                             
        369 GGAGATCGAGGATAGCGGATCTTGTCTTCCTGTATTTGGCAGCGGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

                 *           *    *      *            *   
        415 GGGGAGCGAAGATAGCAAATCTGGTCTTCTTGTATTTGGCAGGGGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

            *         *      *  *   *                     
        461 AGGGATCGAAAATAGCAAATATTGGCTTCCTGTATTTGGCAGCGGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

                     *    *                      *     *  
        507 GGGGATCGAGGATATCAGATCTTGTCTTCCTGTATTTCGCAGCAGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

                     *    *                      *     *  
        553 GGGGATCGAGGATATCAGATCTTGTCTTCCTGTATTTCGCAGCAGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

                   *                        *    *    * * 
        599 GGGGATCAAAGATAGCAGATCTTGTCTTCCTGAATTTCGCAGTGAA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

            * **  *       *        *                      
        645 AGATATGGAAGATATCAGATCTTATCTTCCTGTATTTGGCAGCGGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

                       *                       *          
        691 GGGGATCGAAGTTAGCAGATCTTGTCTTCCTGTATCTGGCAGCGGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

                 *        *  * *  *                     * 
        737 GGGGAACGAAGATATCAAACCTCGTCTTCCTGTATTTGGCAGCGAA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

                          *                            *  
        783 GGGGATCGAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCAGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

                                         *                
        829 GGGGATCGAAGATAGCAGATCTTGTCTTCGTGTATTTGGCAGCGGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

            *                *  *        *        *       
        875 AGGGATCGAAGATAGCAAATATTGTCTTCATGTATTTGCCAGCGGA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

              *                               
        921 GGAGATCGAAGATAGCAGATCTTGTCTTCCTGTA
          1 GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTA


Statistics
Matches: 782,  Mismatches: 122, Indels: 8
        0.86            0.13        0.01

Matches are distributed among these distances:
  45    2  0.00
  46  778  0.99
  47    2  0.00

ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30


Consensus pattern (46 bp):   
GGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA

Done.