Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4260

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 335

Length: 559
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34


Found at i:198 original size:11 final size:11

Alignment explanation


    Indices: 180--221  Score: 52
    Period size: 11  Copynumber: 4.0  Consensus size: 11

        170 TATTTATGAA

                       
        180 ATAT-TTATTT
          1 ATATATTATTT

                      *
        190 ATATATTATTA
          1 ATATATTATTT

                     * 
        201 ATATATTATAT
          1 ATATATTATTT

                       
        212 ATATA-TATTT
          1 ATATATTATTT

        222 TTTAATAAAG


Statistics
Matches: 27,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  10    8  0.30
  11   19  0.70

ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60


Consensus pattern (11 bp):   
ATATATTATTT
Done.