Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3911

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 376

Length: 628
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41


Found at i:214 original size:24 final size:24

Alignment explanation


    Indices: 169--214  Score: 56
    Period size: 24  Copynumber: 1.9  Consensus size: 24

        159 ACAAATTTAT

                      *      *      
        169 TTATTAAAAATTAATTTCATAACA
          1 TTATTAAAAAGTAATTTAATAACA

                  *      *        
        193 TTATTACAAAGTAGTTTAATAA
          1 TTATTAAAAAGTAATTTAATAA

        215 TATATAAATA


Statistics
Matches: 18,  Mismatches: 4, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  24   18  1.00

ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41


Consensus pattern (24 bp):   
TTATTAAAAAGTAATTTAATAACA
Done.