Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1131

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2658
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30

Warning! 19 characters in sequence are not A, C, G, or T


Found at i:1476 original size:40 final size:40

Alignment explanation


    Indices: 1399--1479  Score: 117
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       1389 CCCCAGGTCC

                                **                  
       1399 AGGAGCTCTGCGAGTTTTCAGGTCACTCAAAGACTTCACT
          1 AGGAGCTCTGCGAGTTTTCAACTCACTCAAAGACTTCACT

                                    *    *  *       
       1439 AGGAGCTCTGCGAGTTTTCAACTCCCTCACAGCCTTCACT
          1 AGGAGCTCTGCGAGTTTTCAACTCACTCAAAGACTTCACT

             
       1479 A
          1 A

       1480 CATCTTGGAG


Statistics
Matches: 36,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  40   36  1.00

ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27


Consensus pattern (40 bp):   
AGGAGCTCTGCGAGTTTTCAACTCACTCAAAGACTTCACT
Done.