Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold774
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42978
ACGTcount: A:0.04, C:0.04, G:0.03, T:0.05
Warning! 36064 characters in sequence are not A, C, G, or T
Found at i:36485 original size:132 final size:132
Alignment explanation
Indices: 36227--38571 Score: 3162
Period size: 132 Copynumber: 17.8 Consensus size: 132
36217 NNNNNNNTGA
* * *
36227 CTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATCCACCATCTTCGATCTGCTGCACTA-T
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * *
36291 ATCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCGCTACTGCTAAGGGAGATAGGACTAA
66 -GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAA
36356 TGG
130 TGG
36359 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * * *
36424 GCTTAAGGTGATAGAATCTGCAATCTTCAACCTACTCCACCAGTGCTTAGGGTGGTCGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
36489 GG
131 GG
36491 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * *
36556 GCTTAGGGTGACAGAATCTCCAATCTTCAACCTACTCCACCAGTGCTTAGGGTGGTCGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
36621 GG
131 GG
** * *
36623 CTTAAATCTAATTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTGCAGTACA
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAC-
* * * *
36688 T-CTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTTCACTACTGCTGAGGGAGATAGGACTAA
65 TGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAA
36752 TGG
130 TGG
* * * * *
36755 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGTTTAACCATCTTTGATCTCCTCCACTATT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * *
36820 GCTTAGGCTGAC---A-----AA-CTTCAACCTACTCCACTACTTCTTAGGATGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
36876 GG
131 GG
* * * *
36878 CTTAAATCTGCTTCTCCACTGCATTTGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * * *
36943 GTTTAGGGTGACAAAATCTGCAATCTTTAACCTACTCCATTACTGCTAAGGGAGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
37008 GG
131 GG
* * * * * * *
37010 CTTAAATCTCCTTCTTCACTGTATTTGGAGGATAAGATTCACCATCTTTGATCTACTCTACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * *
37075 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACCCCACTACAGCTTAGGGAGATTGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
*
37140 TG
131 GG
** * *
37142 CTTAAATCTGCTTCTTTAC--TATCTGGAGAAGATAAGATTCACCATCTTCGATCCGCTCCACAA
1 CTTAAATCTGCTTCTCCACTGTAT-TGG-GAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
* * * *
37205 CTGCTTAGGGTAACAGAATTTGCAGTCTTCAACCTACCCCACTACTGCTTAGGGTGATAGGACTA
64 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
37270 ATGG
129 ATGG
* *
37274 CATAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCAATACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* *
37339 GCTTAGGGTGACAGAATCTGTAATCTTCATCCTACTCCACTACT--TTAAGGGTGATAGGACTAA
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT-AGGGTGATAGGACTAA
*
37402 TTG
130 TGG
*
37405 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCAATACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* *
37470 GCTTAGGGTGACAGAATCTGTAATCTTCATCCTACTCCACTACT--TTAAGGGTGATAGGACTAA
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT-AGGGTGATAGGACTAA
*
37533 TTG
130 TGG
* * *
37536 CTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCGTCTTCGATATGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * *
37601 GCTTAGGGTGACAGAATCTGCAATCTTTAACCTACTCCAGTACTGCTTAGGGAGATTGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
37666 GG
131 GG
* * * * * *
37668 CTTACATCTGCTTCTCCACTATTTTGAGAAGATATGATTCACCATCTTCGATCCGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * *
37733 GTTTAGGGTGATAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGGTAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
37798 GG
131 GG
* * * *
37800 CTTAAATCTACTTCTCCACTGTTTTGGGAAGATAAGATTCACCATCTTCGATCTGCTGCAGTACA
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAC-
* * *
37865 T-CTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTACTGCTGAGGGAGATAGGACTAA
65 TGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAA
37929 TGG
130 TGG
* * * * * * *
37932 CTTAACTCTACTTCTCCACTGTATTGGGAAGATAAGTTTAACCATCTTTGATCTCCTCCACTATT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * *
37997 GCTTAGGCTGACAGAATCTGTAATCATCAGCCTACTCCACTACTGCTAAGGGTGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
**
38062 TT
131 GG
* *
38064 CTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* *
38129 GCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTTCTTAGGGTGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
38194 GG
131 GG
* * * * *
38196 CTTATATCTGCTTCTCCACTATATTGGGAAGATAAGATTCATCATATTCGATCTGTTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * * * * *
38261 GTTTAGGGTGACAAAATCAGCATTCTTTAACCTACTCCACAACTGC-TATGGGAGATTGGACTAA
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA-GGGTGATAGGACTAA
38325 TGG
130 TGG
* *
38328 CTTAAATCTACTTCTCCACTGTATTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * ** *
38393 GCTTTGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACAGCTTAGGCAGATTGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
38458 GG
131 GG
* * * * * * * *
38460 CTTAAATATGCTTCTCCACTATCTTGAGAAGATAAGATTCACAATCTTCGATCCGATCCACAACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * *
38525 GCTTAGGGTAACAAAATTTGCAGTCTTCAACCTACTCCACTACTGCT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT
38572 CTGCTTCTCC
Statistics
Matches: 1963, Mismatches: 227, Indels: 46
0.88 0.10 0.02
Matches are distributed among these distances:
123 103 0.05
124 2 0.00
126 1 0.00
129 1 0.00
130 5 0.00
131 257 0.13
132 1581 0.81
133 10 0.01
134 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
GG
Found at i:36706 original size:264 final size:264
Alignment explanation
Indices: 36227--42978 Score: 8162
Period size: 264 Copynumber: 25.6 Consensus size: 264
36217 NNNNNNNTGA
* * *
36227 CTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATCCACCATCTTCGATCTGCTGCACTA-T
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * *
36291 ATCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCGCTACTGCTAAGGGAGATAGGACTAA
66 -GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAA
36356 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
130 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
* * * * * *
36421 ACTGCTTAAGGTGATAGAATCTGCAATCTTCAACCTACTCCACCAGTGCTTAGGGTGGTCGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
36486 AATGG
260 AATGG
36491 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * *
36556 GCTTAGGGTGACAGAATCTCCAATCTTCAACCTACTCCACCAGTGCTTAGGGTGGTCGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
** * *
36621 GGCTTAAATCTAATTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTGCAGTA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
* * * *
36686 CAT-CTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTTCACTACTGCTGAGGGAGATAGGACT
196 C-TGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
36750 AATGG
260 AATGG
* * * * *
36755 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGTTTAACCATCTTTGATCTCCTCCACTATT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * *
36820 GCTTAGGCTGAC---A-----AA-CTTCAACCTACTCCACTACTTCTTAGGATGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* * * *
36876 GGCTTAAATCTGCTTCTCCACTGCATTTGGAAGATAAGATTCATCATATTCGATCTGCTCCACTA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
* * * * * *
36941 CTGTTTAGGGTGACAAAATCTGCAATCTTTAACCTACTCCATTACTGCTAAGGGAGATAGGACTA
196 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
37006 ATGG
261 ATGG
* * * * * * *
37010 CTTAAATCTCCTTCTTCACTGTATTTGGAGGATAAGATTCACCATCTTTGATCTACTCTACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * *
37075 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACCCCACTACAGCTTAGGGAGATTGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* ** *
37140 TGCTTAAATCTGCTTCTTTAC--TATCTGGAGAAGATAAGATTCACCATCTTCGATCCGCTCCAC
131 GGCTTAAATCTGCTTCTCCACTGTAT-TGG-GAAGATAAGATTCACCATCTTCGATCTGCTCCAC
* * * * *
37203 AACTGCTTAGGGTAACAGAATTTGCAGTCTTCAACCTACCCCACTACTGCTTAGGGTGATAGGAC
194 TACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGAC
37268 TAATGG
259 TAATGG
* *
37274 CATAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCAATACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* *
37339 GCTTAGGGTGACAGAATCTGTAATCTTCATCCTACTCCACTACT--TTAAGGGTGATAGGACTAA
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT-AGGGTGATAGGACTAA
* *
37402 TTGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCAAT
130 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
* *
37467 ACTGCTTAGGGTGACAGAATCTGTAATCTTCATCCTACTCCACTACT--TTAAGGGTGATAGGAC
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT-AGGGTGATAGGAC
*
37530 TAATTG
259 TAATGG
* * *
37536 CTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCGTCTTCGATATGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * *
37601 GCTTAGGGTGACAGAATCTGCAATCTTTAACCTACTCCAGTACTGCTTAGGGAGATTGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* * * * * *
37666 GGCTTACATCTGCTTCTCCACTATTTTGAGAAGATATGATTCACCATCTTCGATCCGCTCCACTA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
* * *
37731 CTGTTTAGGGTGATAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGGTAGGACTA
196 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
37796 ATGG
261 ATGG
* * * *
37800 CTTAAATCTACTTCTCCACTGTTTTGGGAAGATAAGATTCACCATCTTCGATCTGCTGCAGTACA
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAC-
* * *
37865 T-CTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTACTGCTGAGGGAGATAGGACTAA
65 TGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAA
* * * * * *
37929 TGGCTTAACTCTACTTCTCCACTGTATTGGGAAGATAAGTTTAACCATCTTTGATCTCCTCCACT
130 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
* * * * * *
37994 ATTGCTTAGGCTGACAGAATCTGTAATCATCAGCCTACTCCACTACTGCTAAGGGTGATAGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
**
38059 AATTT
260 AATGG
* *
38064 CTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* *
38129 GCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTTCTTAGGGTGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* * * * *
38194 GGCTTATATCTGCTTCTCCACTATATTGGGAAGATAAGATTCATCATATTCGATCTGTTCCACTA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
* * * * * * * *
38259 CTGTTTAGGGTGACAAAATCAGCATTCTTTAACCTACTCCACAACTGC-TATGGGAGATTGGACT
196 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA-GGGTGATAGGACT
38323 AATGG
260 AATGG
* *
38328 CTTAAATCTACTTCTCCACTGTATTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * ** *
38393 GCTTTGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACAGCTTAGGCAGATTGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* * * * * * * *
38458 GGCTTAAATATGCTTCTCCACTATCTTGAGAAGATAAGATTCACAATCTTCGATCCGATCCACAA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
* * * * ** *
38523 CTGCTTAGGGTAACAAAATTTGCAGTCTTCAACCTACTCCACTACTGCTCT-GCTTCTCCACTAT
196 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT-TAG--GGT----GAT
*
38587 ATTGGGA--AGATAAG
254 A---GGACTA-AT-GG
* * * * * * * * * *
38601 ATTCACCATCTTCGATCTCCTCCACTACTGCT-TTTGG-TGAT-AGAGTCTGCAATCTTCAACCT
1 CTT-A-AATC-T-G--CTTCT-C-C-ACTG-TATTGGGAAGATAAGATTC-ACCATCTTCGATCT
* * * * * * * * *
38663 ACTCCACTACTGCTCTGCTTCTCCACTATATTGGGAAGATAAGATTC-ACCATCTTCGATCTCCT
55 GCTCCACTA-----CTG--------CT-TA--GGG-TGA-CAGAATCTGCAATCTTCAACCTACT
** * ** *
38727 CCACTACTGCTTTTGGTGATAGAGTCTGCAATCTTCAACCTACTCCACTACTGCTCTGCTTCTCC
102 CCACTACTGCTTAGGGTGATAG-GACT--AA---T--GGCT--T--A--A---ATCTGCTTCTCC
* * ** * *
38792 ACTATATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTTTGGTGATAGAGT
150 ACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAAT
* ** *
38857 CTGCAATCTTCAACCTACTCCACTACAGCTTAGGCAGATTGGACTAATGG
215 CTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
* * ** *
38907 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTGATCATAGTCGATCTGCACCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * * * *
38972 GTTTAGGGTGACAAAATCTGCAATCTTTAACGTACTCCACTACTGCTCAAGGAGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* * * *
39037 GGCTTAAATATAG-TTCTCCACAGTATTTGGAAGATAAGATTCACCATCTTCGATCTACTCCACT
131 GGCTTAAATCT-GCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
** * * * * *
39101 ACTGCTTTTGGTGATAGAATCTGCAATCTTCAACCTACTCCACTGCAGCTTAGGGAGATTGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
*
39166 AATTG
260 AATGG
* * * * * * **
39171 CTTAAATCTGCTTCTCCACTATCTTGAGAGGATAAGATTCACCATCTTCGTTCCGCTCCAAAACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* *
39236 GCTTAGGGT-AGCAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGTGGTAGGACTAA
66 GCTTAGGGTGA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAA
* *
39300 TGGCTT-AATCTGCTTCTCCACTGTATTGGAAAGATAAGATTCACAATCTTCGATCTGCTCCACT
130 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
* * * * * *
39364 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCTACCAGTGCTTAGGTTGGTCGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
39429 AATGG
260 AATGG
** * * *
39434 CTTAAATCTAATTCTCCACTGTAGTGGGAAGATAAGATTCACCATCTTCGATCTGCTGCAGTACA
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAC-
** * *
39499 T-CTTAGGGTGACAGAATCTGCAATCTTCAGTCTACTCCACTACTGCTGAGGGAGATAGGACTAA
65 TGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAA
* *
39563 TGGCTTAAATCTGCTTCTCCACTGTTTTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACT
130 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
* * * * * *
39628 ATTGCTTAGGCTGACAGAATCTACAAACTTCAACCTACTCCACTACTTCTTAGGATGATAGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
39693 AATGG
260 AATGG
* * * * *
39698 CTTAAATCTGCTTCTCCACTGCATTTGGAAGGTAAGATTCATCATATTCGATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * * *
39763 GTTTAGGGTGACAAAATCTGCAATCTTTAACCTACTCCATTACTGCTCAGGGAGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* * * *
39828 GGCTTAAATCTACTTCTCCACTGTATTTGGAGGATAAGATTCACCATCTTCGATCTACTCCACTA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
* * * ** *
39893 CTGCTTAGGGTGACAAAATCTACAATCTTCAACCTACTCCACTACAGCTTTCGGAGATTA-GACT
196 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA-TAGGACT
39957 AATGG
260 AATGG
* ** * * * * * *
39962 CTTAAAACTGCTTCTTTACTATCTTGAGAAGATAAGATTCACCATTTTCGATCCGCTCCACAAC-
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* *
40026 GTCTTAGCGTAACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAA
66 G-CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAA
* *
40091 TGGCTTAAATCTGCTTCTCCACTGTATTTGGAAGATAAGATTCACCATCTTCGATCTACTCCACT
130 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
* * * * *
40156 ACTACTTAGGTTGAC--AATCTGCAATCATT-AACCGACTCCACTACTTCTTAAGGTGATAGGAC
195 ACTGCTTAGGGTGACAGAATCTGCAATC-TTCAACCTACTCCACTACTGCTTAGGGTGATAGGAC
*
40218 TAATGA
259 TAATGG
* * * * * *
40224 CTTCAATTTGCTTCTCCACTGTGTTGGGAATATAAGATTCACCATATTCGATCTACTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* *
40289 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTTCTTAGGGTTATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* * * * *
40354 TGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGA-TCAGCATATTCGATCTGCTTCACTA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
* * * * * *
40418 CTGTTTAGGGTGACAGAATCTCCAATCTCCAACCAACTGCACTA-TGGCTTAGGGAGATAGGACT
196 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAGGACT
*
40482 AATGT
260 AATGG
* * * *
40487 CTTAAATTTGCTTCTCCTCTGTATTGGTAAGATCAGATTCACCATCTTCGATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * *
40552 CCTTAGGGTGACATAATCTGCAACCTTCAACCTACTCCACTACTGCTTAAGGTGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* * *
40617 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAAATTCACCATCTCCAATCTGCAT-CACT
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACT
* * *
40681 ACTGGTTAGGGTGACAGAATCT-CTAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGAC
195 ACTGCTTAGGGTGACAGAATCTGC-AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGAC
*
40745 TAAAGG
259 TAATGG
* * * * * *
40751 GTTAAATCTGCTTCTCCACTGTCTTGGGAAGATCAGATTGACCATCTTCGATCTCCTCCAGTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * *
40816 CCTTAGGGTGACAGAATCTGCAACCTTCAACCTACTCCACTACTGCTGAAGGTGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
40881 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACT
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACT
* * * * *
40945 ACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCGCTACTGATTAGGGTGATAGTACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
*
41010 AGTGG
260 AATGG
* *
41015 CTTAAATCTCCTTCTCTACTGTATTGGGGAA-ATAAGATTCACCATCTTCGATCTGCTCCACTAC
1 CTTAAATCTGCTTCTCCACTGTATT-GGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAC
* *
41079 CGCTTAGGGTGACAGAAT-TCGCAATCTTCAACCTACTCTACTACTGCTTAGGGTGATAGGACTA
65 TGCTTAGGGTGACAGAATCT-GCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
* *
41143 ATGGCTTAAATCTGCTTCTCCACTGTATTAGGAAGATAAGATACACCATCTTCGATCTGCAT-CA
129 ATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCA
* * * * *
41207 CTACTGGTTAGTGTAACAGAATTTGCAATCTTCAACCTACTCCACTACTGCATAGGGTGATAGGA
193 CTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA
41272 CTAATGG
258 CTAATGG
* * * *
41279 CTTAAATCTACTTCTCCACTGTATTAGGAAGATAAGATTAACCATCTTCGATCTGCTCCATTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* *
41344 GCTTAGGGTTACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGCT--T---A--AAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* * *
41402 --CTGT---T-T--TTCT--ACTGTATTAGGAAGTTATGATTCACCATCTTCGATCTAG-TCCAC
131 GGCT-TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCT-GCTCCAC
* * * * *
41456 TAATGCTTAGGGTGACAGAATGTACAATCTTCAACCTACTCCACTACTGCTTAGGGAGATTGGAC
194 TACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGAC
41521 TAATGG
259 TAATGG
* * * * * * * * * *
41527 CTTACATTTGCTTCTCAACTATCTTGAGAAGATATGATTCACCATCTTCGTTCAGCTGCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * *
41592 GCTTAGGGTGACAAAATCTACAATCTTAAACCTACTCCACTACTACTTAGGGTGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* * * * *
41657 GACTTCATTCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCAATCTGCTCCACTA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
* *
41722 CTGCTTAGGGTGACAGAATCTACAATCTTCAACCTTCTCCACTACTGCTTAGGGTGATAGGACTA
196 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
41787 ATGG
261 ATGG
* * *
41791 CTTAAATCTGCTTCTCCACTGTATTAGGAAGATAAGATTAACAATCTTCGATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * * *
41856 GTTTAGGGGGACAAAATATGTAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* * *
41921 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCTATCTGCTCCACTA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
* * * * *
41986 CTGTTTAGGGTGACAAAATATGTAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTA
196 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
42051 ATGG
261 ATGG
*
42055 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTTCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * *
42120 GGTTAGGGTGATAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAGT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* *
42185 GGCTTAAATCTCCTTGTCCACTGTATTGGGAAGATAAGATTCACCA-CTTTCGATCTGCTCCACT
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC-TTCGATCTGCTCCACT
*
42249 ACTGCTTAGGGTGAC---A---G-AAT-TT---GC-A----A-T-CT--TTAGGGTGATAGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
42294 AATGG
260 AATGG
*
42299 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * * * * * *
42364 GTTTAAGGTGATAGAATCTGTAATCTTCAACCTATTACACTACTACTTAGGGAGATAGGTCTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* *
42429 GGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATCTTCGATCTGCAT-CACT
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACT
* * * *
42493 ACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTTCTTAGGATGATAGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
*
42558 AATGT
260 AATGG
* * * * * * *
42563 CTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCACCATCTTCGACCCGCTCCACAACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* *
42628 CCTTAGGGTAACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
* ** *
42693 GGCTTAAATATGCCCCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCACTA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
*
42758 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGGACTA
196 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
42823 ATGG
261 ATGG
* * *
42827 CTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCAATCTGCTCCACTACC
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * ** *
42892 GCTTAGGGTGGCAAAATCTGCAATCTTCAACCTACTCCACTACTATTTAGGGTGAGAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
42957 GGCTTAAATCTGCTTCTCCACT
131 GGCTTAAATCTGCTTCTCCACT
Statistics
Matches: 5561, Mismatches: 766, Indels: 322
0.84 0.12 0.05
Matches are distributed among these distances:
244 208 0.04
245 2 0.00
246 2 0.00
247 3 0.00
248 198 0.04
249 1 0.00
250 6 0.00
251 3 0.00
252 4 0.00
253 3 0.00
254 1 0.00
255 225 0.04
256 7 0.00
257 8 0.00
258 2 0.00
259 2 0.00
260 2 0.00
261 39 0.01
262 318 0.06
263 654 0.12
264 3540 0.64
265 20 0.00
266 1 0.00
267 1 0.00
269 1 0.00
270 2 0.00
271 2 0.00
272 2 0.00
273 8 0.00
274 1 0.00
275 4 0.00
276 1 0.00
278 2 0.00
279 4 0.00
280 13 0.00
281 52 0.01
282 12 0.00
283 1 0.00
284 2 0.00
285 1 0.00
286 3 0.00
293 3 0.00
294 2 0.00
295 1 0.00
296 1 0.00
297 11 0.00
298 48 0.01
299 13 0.00
300 4 0.00
301 2 0.00
302 1 0.00
303 1 0.00
304 4 0.00
305 1 0.00
306 8 0.00
307 2 0.00
308 2 0.00
309 2 0.00
310 1 0.00
312 1 0.00
313 1 0.00
314 1 0.00
315 90 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (264 bp):
CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT
GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
ATGG
Found at i:38097 original size:396 final size:396
Alignment explanation
Indices: 36227--42978 Score: 8255
Period size: 396 Copynumber: 17.4 Consensus size: 396
36217 NNNNNNNTGA
* * *
36227 CTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATCCACCATCTTCGATCTGCTGCACTA-T
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * *
36291 ATCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCGCTACTGCTAAGGGAGATAGGACTAA
66 -GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAA
36356 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
130 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
* * * * * *
36421 ACTGCTTAAGGTGATAGAATCTGCAATCTTCAACCTACTCCACCAGTGCTTAGGGTGGTCGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
*
36486 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCA
260 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCA
* * * * *
36551 CTACTGCTTAGGGTGACAGAATCTCCAATCTTCAACCTACTCCACCAGTGCTTAGGGTGGTCGGA
325 CTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA
36616 CTAATGG
390 CTAATGG
** * *
36623 CTTAAATCTAATTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTGCAGTACA
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAC-
* * *
36688 T-CTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTTCACTACTGCTGAGGGAGATAGGACTAA
65 TGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAA
* * * *
36752 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGTTTAACCATCTTTGATCTCCTCCACT
130 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
* * * *
36817 ATTGCTTAGGCTGAC---A-----AA-CTTCAACCTACTCCACTACTTCTTAGGATGATAGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
* * * * *
36873 AATGGCTTAAATCTGCTTCTCCACTGCATTTGGAAGATAAGATTCATCATATTCGATCTGCTCCA
260 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCA
* * * * * *
36938 CTACTGTTTAGGGTGACAAAATCTGCAATCTTTAACCTACTCCATTACTGCTAAGGGAGATAGGA
325 CTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA
37003 CTAATGG
390 CTAATGG
* * * * * * *
37010 CTTAAATCTCCTTCTTCACTGTATTTGGAGGATAAGATTCACCATCTTTGATCTACTCTACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * *
37075 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACCCCACTACAGCTTAGGGAGATTGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
* ** *
37140 TGCTTAAATCTGCTTCTTTAC--TATCTGGAGAAGATAAGATTCACCATCTTCGATCCGCTCCAC
131 GGCTTAAATCTGCTTCTCCACTGTAT-TGG-GAAGATAAGATTCACCATCTTCGATCTGCTCCAC
* * * * *
37203 AACTGCTTAGGGTAACAGAATTTGCAGTCTTCAACCTACCCCACTACTGCTTAGGGTGATAGGAC
194 TACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGAC
* *
37268 TAATGGCATAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
259 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCC
* * *
37333 AATACTGCTTAGGGTGACAGAATCTGTAATCTTCATCCTACTCCACTACT--TTAAGGGTGATAG
324 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT-AGGGTGATAG
*
37396 GACTAATTG
388 GACTAATGG
*
37405 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCAATACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * *
37470 GCTTAGGGTGACAGAATCTGTAATCTTCATCCTACTCCACTACT--TTAAGGGTGATAGGACTAA
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT-AGGGAGATAGGACTAA
* * * *
37533 TTGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCGTCTTCGATATGCTCCACT
130 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
* * * *
37598 ACTGCTTAGGGTGACAGAATCTGCAATCTTTAACCTACTCCAGTACTGCTTAGGGAGATTGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
* * * * *
37663 AATGGCTTACATCTGCTTCTCCACTATTTTGAGAAGATATGATTCACCATCTTCGATCCGCTCCA
260 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCA
* * *
37728 CTACTGTTTAGGGTGATAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGGTAGGA
325 CTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA
37793 CTAATGG
390 CTAATGG
* * * *
37800 CTTAAATCTACTTCTCCACTGTTTTGGGAAGATAAGATTCACCATCTTCGATCTGCTGCAGTACA
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAC-
* *
37865 T-CTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTACTGCTGAGGGAGATAGGACTAA
65 TGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAA
* * * * * *
37929 TGGCTTAACTCTACTTCTCCACTGTATTGGGAAGATAAGTTTAACCATCTTTGATCTCCTCCACT
130 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
* * * * * *
37994 ATTGCTTAGGCTGACAGAATCTGTAATCATCAGCCTACTCCACTACTGCTAAGGGTGATAGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
** *
38059 AATTTCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTC-CTCC
260 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC-CGCTCC
* *
38123 ACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTTCTTAGGGTGATAGG
324 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
38188 ACTAATGG
389 ACTAATGG
* * * * *
38196 CTTATATCTGCTTCTCCACTATATTGGGAAGATAAGATTCATCATATTCGATCTGTTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * * * *
38261 GTTTAGGGTGACAAAATCAGCATTCTTTAACCTACTCCACAACTGC-TATGGGAGATTGGACTAA
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA-GGGAGATAGGACTAA
* *
38325 TGGCTTAAATCTACTTCTCCACTGTATTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
130 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
* * ** *
38390 ACTGCTTTGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACAGCTTAGGCAGATTGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
* * * * * *
38455 AATGGCTTAAATATGCTTCTCCACTATCTTGAGAAGATAAGATTCACAATCTTCGATCCGATCCA
260 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCA
* * * * *
38520 CAACTGCTTAGGGTAACAAAATTTGCAGTCTTCAACCTACT-C-C-A---C---------T---A
325 CTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA
38567 C---T-G
390 CTAATGG
* *
38570 C-----TCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
** * *
38630 GCTTTTGGTGATAGAGTCTGCAATCTTCAACCTACT-C-C-A---C---------T---AC---T
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
* *
38674 -GC-----TCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
** * *
38733 CTGCTTTTGGTGATAGAGTCTGCAATCTTCAACCTACT-C-C-A---C---------T---AC--
196 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
*
38778 -T-GC-----TCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTC-CTCCA
261 ATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC-CGCTCCA
** * * * ** *
38835 CTACTGCTTTTGGTGATAGAGTCTGCAATCTTCAACCTACTCCACTACAGCTTAGGCAGATTGGA
325 CTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA
38900 CTAATGG
390 CTAATGG
* * ** *
38907 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTGATCATAGTCGATCTGCACCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * * *
38972 GTTTAGGGTGACAAAATCTGCAATCTTTAACGTACTCCACTACTGCTCAAGGAGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
* * * *
39037 GGCTTAAATATAG-TTCTCCACAGTATTTGGAAGATAAGATTCACCATCTTCGATCTACTCCACT
131 GGCTTAAATCT-GCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
** * * * * *
39101 ACTGCTTTTGGTGATAGAATCTGCAATCTTCAACCTACTCCACTGCAGCTTAGGGAGATTGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
* * * * * *
39166 AATTGCTTAAATCTGCTTCTCCACTATCTTGAGAGGATAAGATTCACCATCTTCGTTCCGCTCCA
260 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCA
** * *
39231 AAACTGCTTAGGGT-AGCAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGTGGTAGG
325 CTACTGCTTAGGGTGA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
39295 ACTAATGG
389 ACTAATGG
* *
39303 CTT-AATCTGCTTCTCCACTGTATTGGAAAGATAAGATTCACAATCTTCGATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * ** * *
39367 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCTACCAGTGCTTAGGTTGGTCGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
** * * *
39432 GGCTTAAATCTAATTCTCCACTGTAGTGGGAAGATAAGATTCACCATCTTCGATCTGCTGCAGTA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
** * *
39497 CAT-CTTAGGGTGACAGAATCTGCAATCTTCAGTCTACTCCACTACTGCTGAGGGAGATAGGACT
196 C-TGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
*
39561 AATGGCTTAAATCTGCTTCTCCACTGTTTTGGGAAGATAAGATTCACCATCTTCGATCTC-CTCC
260 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC-CGCTCC
* * * * * *
39625 ACTATTGCTTAGGCTGACAGAATCTACAAACTTCAACCTACTCCACTACTTCTTAGGATGATAGG
324 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
39690 ACTAATGG
389 ACTAATGG
* * * * *
39698 CTTAAATCTGCTTCTCCACTGCATTTGGAAGGTAAGATTCATCATATTCGATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * *
39763 GTTTAGGGTGACAAAATCTGCAATCTTTAACCTACTCCATTACTGCTCAGGGAGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
* * * *
39828 GGCTTAAATCTACTTCTCCACTGTATTTGGAGGATAAGATTCACCATCTTCGATCTACTCCACTA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
* * * ** *
39893 CTGCTTAGGGTGACAAAATCTACAATCTTCAACCTACTCCACTACAGCTTTCGGAGATTA-GACT
196 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA-TAGGACT
* ** * * * *
39957 AATGGCTTAAAACTGCTTCTTTACTATCTTGAGAAGATAAGATTCACCATTTTCGATCCGCTCCA
260 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCA
* * *
40022 CAAC-GTCTTAGCGTAACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
325 CTACTG-CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
40086 ACTAATGG
389 ACTAATGG
* *
40094 CTTAAATCTGCTTCTCCACTGTATTTGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * * *
40159 ACTTAGGTTGAC--AATCTGCAATCATT-AACCGACTCCACTACTTCTTAAGGTGATAGGACTAA
66 GCTTAGGGTGACAGAATCTGCAATC-TTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAA
* * * * * * *
40221 TGACTTCAATTTGCTTCTCCACTGTGTTGGGAATATAAGATTCACCATATTCGATCTACTCCACT
130 TGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT
* *
40286 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTTCTTAGGGTTATAGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
* * * * * *
40351 AATTGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGA-TCAGCATATTCGATCTGCTTCA
260 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCA
* * * * * *
40415 CTACTGTTTAGGGTGACAGAATCTCCAATCTCCAACCAACTGCACTA-TGGCTTAGGGAGATAGG
325 CTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAGG
*
40479 ACTAATGT
389 ACTAATGG
* * * *
40487 CTTAAATTTGCTTCTCCTCTGTATTGGTAAGATCAGATTCACCATCTTCGATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * *
40552 CCTTAGGGTGACATAATCTGCAACCTTCAACCTACTCCACTACTGCTTAAGGTGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
* * *
40617 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAAATTCACCATCTCCAATCTGCAT-CACT
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACT
* * *
40681 ACTGGTTAGGGTGACAGAATCT-CTAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGAC
195 ACTGCTTAGGGTGACAGAATCTGC-AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGAC
* * * * *
40745 TAAAGGGTTAAATCTGCTTCTCCACTGTCTTGGGAAGATCAGATTGACCATCTTCGATCTC-CTC
259 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC-CGCTC
* * * * *
40809 CAGTACTCCTTAGGGTGACAGAATCTGCAACCTTCAACCTACTCCACTACTGCTGAAGGTGATAG
323 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
40874 GACTAATGG
388 GACTAATGG
40883 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTAC
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTAC
* * * * * * *
40947 TGGTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCGCTACTGATTAGGGTGATAGTACTAG
65 TGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAA
* *
41012 TGGCTTAAATCTCCTTCTCTACTGTATTGGGGAA-ATAAGATTCACCATCTTCGATCTGCTCCAC
130 TGGCTTAAATCTGCTTCTCCACTGTATT-GGGAAGATAAGATTCACCATCTTCGATCTGCTCCAC
* *
41076 TACCGCTTAGGGTGACAGAAT-TCGCAATCTTCAACCTACTCTACTACTGCTTAGGGTGATAGGA
194 TACTGCTTAGGGTGACAGAATCT-GCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA
* * *
41140 CTAATGGCTTAAATCTGCTTCTCCACTGTATTAGGAAGATAAGATACACCATCTTCGATCTGCAT
258 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGC-T
* * * * *
41205 -CACTACTGGTTAGTGTAACAGAATTTGCAATCTTCAACCTACTCCACTACTGCATAGGGTGATA
322 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
41269 GGACTAATGG
387 GGACTAATGG
* * * *
41279 CTTAAATCTACTTCTCCACTGTATTAGGAAGATAAGATTAACCATCTTCGATCTGCTCCATTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
*
41344 GCTTAGGGTTACAGAATCTGCAATCTTCAACCTACTCCACTACTGC---------T-----T-A-
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
* * * * * *
41393 GGCTTAAATCTGTTTTTCTACTGTATTAGGAAGTTATGATTCACCATCTTCGATCTAG-TCCACT
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCT-GCTCCACT
* * * * *
41457 AATGCTTAGGGTGACAGAATGTACAATCTTCAACCTACTCCACTACTGCTTAGGGAGATTGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
* * * * * * * * * *
41522 AATGGCTTACATTTGCTTCTCAACTATCTTGAGAAGATATGATTCACCATCTTCGTTCAGCTGCA
260 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCA
* * * *
41587 CTACTGCTTAGGGTGACAAAATCTACAATCTTAAACCTACTCCACTACTACTTAGGGTGATAGGA
325 CTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA
*
41652 CTAATGA
390 CTAATGG
* * * *
41659 CTTCATTCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCAATCTGCTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * *
41724 GCTTAGGGTGACAGAATCTACAATCTTCAACCTTCTCCACTACTGCTTAGGGTGATAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
* * *
41789 GGCTTAAATCTGCTTCTCCACTGTATTAGGAAGATAAGATTAACAATCTTCGATCTGCTCCACTA
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
* * * * * *
41854 CTGTTTAGGGGGACAAAATATGTAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTA
196 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
* * * *
41919 ATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCTATCTGCTCCAC
261 ATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCAC
* * * * *
41984 TACTGTTTAGGGTGACAAAATATGTAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGAC
326 TACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGAC
42049 TAATGG
391 TAATGG
*
42055 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTTCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * * *
42120 GGTTAGGGTGATAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAGT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
* *
42185 GGCTTAAATCTCCTTGTCCACTGTATTGGGAAGATAAGATTCACCA-CTTTCGATCTGCTCCACT
131 GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC-TTCGATCTGCTCCACT
*
42249 ACTGCTTAGGGTGAC---A---G-AAT-TT---GC-A----A-T-CT--TTAGGGTGATAGGACT
195 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
* *
42294 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGCTCCA
260 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCA
* * * * * * * * *
42359 CTACTGTTTAAGGTGATAGAATCTGTAATCTTCAACCTATTACACTACTACTTAGGGAGATAGGT
325 CTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA
42424 CTAATGG
390 CTAATGG
* *
42431 CTTAAATATGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATCTTCGATCTGCAT-CACTAC
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTAC
* * *
42495 TGGTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTTCTTA-GGATGATAGGACTA
65 TGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGA-GATAGGACTA
* * * * * * *
42559 ATGTCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCACCATCTTCGACCCGCTCCAC
129 ATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCAC
* * *
42624 AACTCCTTAGGGTAACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGAC
194 TACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGAC
* **
42689 TAATGGCTTAAATATGCCCCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCC
259 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCC
*
42754 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGG
324 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
42819 ACTAATGG
389 ACTAATGG
* * *
42827 CTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCAATCTGCTCCACTACC
1 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * ** * *
42892 GCTTAGGGTGGCAAAATCTGCAATCTTCAACCTACTCCACTACTATTTAGGGTGAGAGGACTAAT
66 GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
42957 GGCTTAAATCTGCTTCTCCACT
131 GGCTTAAATCTGCTTCTCCACT
Statistics
Matches: 5466, Mismatches: 702, Indels: 376
0.84 0.11 0.06
Matches are distributed among these distances:
315 79 0.01
316 2 0.00
317 1 0.00
318 1 0.00
320 2 0.00
321 2 0.00
324 2 0.00
327 1 0.00
330 1 0.00
333 2 0.00
336 2 0.00
337 2 0.00
339 1 0.00
340 1 0.00
341 1 0.00
342 168 0.03
343 1 0.00
344 1 0.00
345 1 0.00
347 2 0.00
348 2 0.00
351 2 0.00
354 1 0.00
357 1 0.00
360 2 0.00
363 2 0.00
364 2 0.00
366 1 0.00
367 1 0.00
368 1 0.00
369 169 0.03
370 2 0.00
371 1 0.00
374 2 0.00
375 4 0.00
376 325 0.06
377 2 0.00
378 4 0.00
379 7 0.00
380 323 0.06
381 3 0.00
382 2 0.00
383 3 0.00
384 4 0.00
385 4 0.00
386 4 0.00
387 329 0.06
388 5 0.00
389 4 0.00
390 4 0.00
391 2 0.00
392 2 0.00
393 153 0.03
394 418 0.08
395 780 0.14
396 2606 0.48
397 15 0.00
398 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (396 bp):
CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
ATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCAC
TACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGAC
TAATGG
Found at i:38657 original size:105 final size:105
Alignment explanation
Indices: 38468--38882 Score: 697
Period size: 105 Copynumber: 4.0 Consensus size: 105
38458 GGCTTAAATA
* * * * * **
38468 TGCTTCTCCACTATCTTGAGAAGATAAGATTCACAATCTTCGATC-CGATCCACAACTGCTTAGG
1 TGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTC-CTCCACTACTGCTTTTG
* * * * * *
38532 GTAACAAAATTTGCAGTCTTCAACCTACTCCACTACTGCTC
65 GTGATAGAGTCTGCAATCTTCAACCTACTCCACTACTGCTC
38573 TGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTTTGG
1 TGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTTTGG
38638 TGATAGAGTCTGCAATCTTCAACCTACTCCACTACTGCTC
66 TGATAGAGTCTGCAATCTTCAACCTACTCCACTACTGCTC
38678 TGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTTTGG
1 TGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTTTGG
38743 TGATAGAGTCTGCAATCTTCAACCTACTCCACTACTGCTC
66 TGATAGAGTCTGCAATCTTCAACCTACTCCACTACTGCTC
38783 TGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTTTGG
1 TGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTTTGG
38848 TGATAGAGTCTGCAATCTTCAACCTACTCCACTAC
66 TGATAGAGTCTGCAATCTTCAACCTACTCCACTAC
38883 AGCTTAGGCA
Statistics
Matches: 296, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
105 295 1.00
106 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (105 bp):
TGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTTTGG
TGATAGAGTCTGCAATCTTCAACCTACTCCACTACTGCTC
Found at i:39033 original size:132 final size:132
Alignment explanation
Indices: 38781--42278 Score: 4521
Period size: 132 Copynumber: 26.7 Consensus size: 132
38771 CCACTACTGC
* * **
38781 TCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTTT
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * * ** *
38846 GGTGATAGAGTCTGCAATCTTCAACCTACTCCACTACAGCTTAGGCAGATTGGACTAATGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
38911 AA
131 AA
* * ** * *
38913 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTGATCATAGTCGATCTGCACCACTACTGTTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * * * * *
38978 GGTGACAAAATCTGCAATCTTTAACGTACTCCACTACTGCTCAAGGAGATAGGACTAATGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
39043 AA
131 AA
* * * * *
39045 TATAG-TTCTCCACAGTATTTGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTT
1 TCT-GCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
* * * * * * *
39109 TGGTGATAGAATCTGCAATCTTCAACCTACTCCACTGCAGCTTAGGGAGATTGGACTAATTGCTT
65 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
39174 AAA
130 AAA
* * * * * * **
39177 TCTGCTTCTCCACTATCTTGAGAGGATAAGATTCACCATCTTCGTTCCGCTCCAAAACTGCTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* *
39242 GGT-AGCAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGTGGTAGGACTAATGGCTT
66 GGTGA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
39306 -AA
130 AAA
* *
39308 TCTGCTTCTCCACTGTATTGGAAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * * * * *
39373 GGTGACAGAATCTGCAATCTTCAACCTACTCTACCAGTGCTTAGGTTGGTCGGACTAATGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
39438 AA
131 AA
** * * *
39440 TCTAATTCTCCACTGTAGTGGGAAGATAAGATTCACCATCTTCGATCTGCTGCAGTACAT-CTTA
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAC-TGCTTA
** * *
39504 GGGTGACAGAATCTGCAATCTTCAGTCTACTCCACTACTGCTGAGGGAGATAGGACTAATGGCTT
65 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
39569 AAA
130 AAA
* * *
39572 TCTGCTTCTCCACTGTTTTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTGCTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * * * *
39637 GCTGACAGAATCTACAAACTTCAACCTACTCCACTACTTCTTAGGATGATAGGACTAATGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
39702 AA
131 AA
* * * * * *
39704 TCTGCTTCTCCACTGCATTTGGAAGGTAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * * * *
39769 GGTGACAAAATCTGCAATCTTTAACCTACTCCATTACTGCTCAGGGAGATAGGACTAATGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
39834 AA
131 AA
* * * *
39836 TCTACTTCTCCACTGTATTTGGAGGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * * ** *
39901 GGTGACAAAATCTACAATCTTCAACCTACTCCACTACAGCTTTCGGAGATTA-GACTAATGGCTT
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA-TAGGACTAATGGCTT
39965 AAA
130 AAA
* ** * * * * * *
39968 ACTGCTTCTTTACTATCTTGAGAAGATAAGATTCACCATTTTCGATCCGCTCCACAAC-GTCTTA
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG-CTTA
* *
40032 GCGTAACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
65 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
40097 AAA
130 AAA
* * *
40100 TCTGCTTCTCCACTGTATTTGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTACTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * * * *
40165 GTTGAC--AATCTGCAATCATT-AACCGACTCCACTACTTCTTAAGGTGATAGGACTAATGACTT
66 GGTGACAGAATCTGCAATC-TTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
*
40227 CAA
130 AAA
* * * * *
40230 TTTGCTTCTCCACTGTGTTGGGAATATAAGATTCACCATATTCGATCTACTCCACTACTGCTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * *
40295 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTTCTTAGGGTTATAGGACTAATTGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
40360 AA
131 AA
* * * * *
40362 TCTGCTTCTCCACTGTATTGGGAAAATAAGA-TCAGCATATTCGATCTGCTTCACTACTGTTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * * * * *
40426 GGTGACAGAATCTCCAATCTCCAACCAACTGCACTA-TGGCTTAGGGAGATAGGACTAATGTCTT
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAGGACTAATGGCTT
40490 AAA
130 AAA
* * * * *
40493 TTTGCTTCTCCTCTGTATTGGTAAGATCAGATTCACCATCTTCGATCTGCTCCACTACTCCTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * *
40558 GGTGACATAATCTGCAACCTTCAACCTACTCCACTACTGCTTAAGGTGATAGGACTAATGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
40623 AA
131 AA
* * * *
40625 TCTGCTTCTCCACTGTATTGGGAAGATAAAATTCACCATCTCCAATCTGCAT-CACTACTGGTTA
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTA
* * * *
40689 GGGTGACAGAATCT-CTAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAAAGGGT
65 GGGTGACAGAATCTGC-AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCT
40753 TAAA
129 TAAA
* * * * * *
40757 TCTGCTTCTCCACTGTCTTGGGAAGATCAGATTGACCATCTTCGATCTCCTCCAGTACTCCTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * *
40822 GGTGACAGAATCTGCAACCTTCAACCTACTCCACTACTGCTGAAGGTGATAGGACTAATGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
40887 AA
131 AA
*
40889 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGGTTA
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTA
* * * * *
40953 GGGTGACAGAATCTGCAATCTTCAACCGACTCCGCTACTGATTAGGGTGATAGTACTAGTGGCTT
65 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
41018 AAA
130 AAA
* * *
41021 TCTCCTTCTCTACTGTATTGGGGAA-ATAAGATTCACCATCTTCGATCTGCTCCACTACCGCTTA
1 TCTGCTTCTCCACTGTATT-GGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
*
41085 GGGTGACAGAAT-TCGCAATCTTCAACCTACTCTACTACTGCTTAGGGTGATAGGACTAATGGCT
65 GGGTGACAGAATCT-GCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCT
41149 TAAA
129 TAAA
* * *
41153 TCTGCTTCTCCACTGTATTAGGAAGATAAGATACACCATCTTCGATCTGCAT-CACTACTGGTTA
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTA
* * * *
41217 GTGTAACAGAATTTGCAATCTTCAACCTACTCCACTACTGCATAGGGTGATAGGACTAATGGCTT
65 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
41282 AAA
130 AAA
* * * *
41285 TCTACTTCTCCACTGTATTAGGAAGATAAGATTAACCATCTTCGATCTGCTCCATTACTGCTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* *
41350 GGTTACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGCT--T---A--AAT--CTGT
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCT-T
41406 ---
130 AAA
* * * *
41406 T-T--TTCT--ACTGTATTAGGAAGTTATGATTCACCATCTTCGATCTAG-TCCACTAATGCTTA
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCT-GCTCCACTACTGCTTA
* * * *
41465 GGGTGACAGAATGTACAATCTTCAACCTACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTT
65 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
*
41530 ACA
130 AAA
* * * * * * * * *
41533 TTTGCTTCTCAACTATCTTGAGAAGATATGATTCACCATCTTCGTTCAGCTGCACTACTGCTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * * * * *
41598 GGTGACAAAATCTACAATCTTAAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGACTTC
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
*
41663 AT
131 AA
* *
41665 TCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCAATCTGCTCCACTACTGCTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* *
41730 GGTGACAGAATCTACAATCTTCAACCTTCTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
41795 AA
131 AA
* * * *
41797 TCTGCTTCTCCACTGTATTAGGAAGATAAGATTAACAATCTTCGATCTGCTCCACTACTGTTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * * * *
41862 GGGGACAAAATATGTAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
41927 AA
131 AA
* * * *
41929 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCTATCTGCTCCACTACTGTTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * * *
41994 GGTGACAAAATATGTAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
42059 AA
131 AA
* *
42061 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTTCACTACTGGTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * *
42126 GGTGATAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAGTGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
42191 AA
131 AA
* *
42193 TCTCCTTGTCCACTGTATTGGGAAGATAAGATTCACCA-CTTTCGATCTGCTCCACTACTGCTTA
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC-TTCGATCTGCTCCACTACTGCTTA
*
42257 GGGTGACAGAATTTGCAATCTT
65 GGGTGACAGAATCTGCAATCTT
42279 TAGGGTGATA
Statistics
Matches: 2917, Mismatches: 398, Indels: 102
0.85 0.12 0.03
Matches are distributed among these distances:
116 89 0.03
117 1 0.00
118 5 0.00
120 1 0.00
121 2 0.00
123 5 0.00
124 2 0.00
125 5 0.00
127 2 0.00
128 1 0.00
130 121 0.04
131 245 0.08
132 2423 0.83
133 15 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (132 bp):
TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
AA
Found at i:41484 original size:116 final size:116
Alignment explanation
Indices: 41277--41510 Score: 344
Period size: 116 Copynumber: 2.0 Consensus size: 116
41267 TAGGACTAAT
*
41277 GGCTTAAATCTACTTCTCCACTGTATTAGGAAGATAAGATTAACCATCTTCGATCTGCTCCATTA
1 GGCTTAAATCTACTTCTCCACTGTATTAGGAAGATAAGATTAACCATCTTCGATCTGCTCCACTA
* * *
41342 CTGCTTAGGGTTACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
66 ATGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTGCTTA
** * * * * *
41393 GGCTTAAATCTGTTTTTCTACTGTATTAGGAAGTTATGATTCACCATCTTCGATCTAG-TCCACT
1 GGCTTAAATCTACTTCTCCACTGTATTAGGAAGATAAGATTAACCATCTTCGATCT-GCTCCACT
*
41457 AATGCTTAGGGTGACAGAATGTACAATCTTCAACCTACTCCACTACTGCTTA
65 AATGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTGCTTA
41509 GG
1 GG
41511 GAGATTGGAC
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
116 104 0.99
117 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (116 bp):
GGCTTAAATCTACTTCTCCACTGTATTAGGAAGATAAGATTAACCATCTTCGATCTGCTCCACTA
ATGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTGCTTA
Found at i:42363 original size:112 final size:112
Alignment explanation
Indices: 42166--42390 Score: 362
Period size: 112 Copynumber: 2.0 Consensus size: 112
42156 CCACTACTGC
* *
42166 TTAGGGTGATAGGACTAGTGGCTTAAATCTCCTTGTCCACTGTATTGGGAAGATAAGATTCACCA
1 TTAGGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
* *
42231 CTTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATTTGCAATCT
66 CTTTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCTGCAATCT
*
42278 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
1 TTAGGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
* * *
42343 -TATTCGATCTGCTCCACTACTGTTTAAGGTGATAGAATCTGTAATCT
66 CT-TTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCTGCAATCT
42390 T
1 T
42391 CAACCTATTA
Statistics
Matches: 104, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
111 1 0.01
112 103 0.99
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (112 bp):
TTAGGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
CTTTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCTGCAATCT
Found at i:42515 original size:132 final size:132
Alignment explanation
Indices: 42278--42978 Score: 1035
Period size: 132 Copynumber: 5.3 Consensus size: 132
42268 TTTGCAATCT
42278 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
1 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
* * * * * * *
42343 TATTCGATCTGCTCCACTACTGTTTAAGGTGATAGAATCTGTAATCTTCAACCTATTACACTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT
42408 AC
131 AC
* * * *
42410 TTAGGGAGATAGGTCTAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAAGATTCATCA
1 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
* *
42475 TCTTCGATCTGCAT-CACTACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTAC
66 TCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTAC
*
42539 TTC
130 TAC
* * * * * *
42542 TTAGGATGATAGGACTAATGTCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCACCA
1 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
* * * * *
42607 TCTTCGACCCGCTCCACAACTCCTTAGGGTAACAGAATCTGCAATCTTCAACCTACTCCACTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT
*
42672 GC
131 AC
* **
42674 TTAGGGTGATAGGACTAATGGCTTAAATATGCCCCTCCACTGTATTGGGAAGATAAGATTCACCA
1 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
* *
42739 TCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACCACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT
*
42804 GC
131 AC
*
42806 TTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCA
1 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
* * * *
42871 TCTTCAATCTGCTCCACTACCGCTTAGGGTGGCAAAATCTGCAATCTTCAACCTACTCCACTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT
*
42936 AT
131 AC
*
42938 TTAGGGTGAGAGGACTAATGGCTTAAATCTGCTTCTCCACT
1 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
Statistics
Matches: 508, Mismatches: 59, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
131 1 0.00
132 506 1.00
133 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
TCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT
AC
Done.