Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3067

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 481

Length: 803
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40


Found at i:631 original size:17 final size:17

Alignment explanation


    Indices: 606--649  Score: 79
    Period size: 17  Copynumber: 2.6  Consensus size: 17

        596 TCTTTTTTTT

                *            
        606 TATTATTATTGAAATTG
          1 TATTTTTATTGAAATTG

                             
        623 TATTTTTATTGAAATTG
          1 TATTTTTATTGAAATTG

                      
        640 TATTTTTATT
          1 TATTTTTATT

        650 TTCACCTCTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  17   26  1.00

ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61


Consensus pattern (17 bp):   
TATTTTTATTGAAATTG
Done.