Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1931

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 720

Length: 1201
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32

Warning! 20 characters in sequence are not A, C, G, or T


Found at i:1039 original size:16 final size:16

Alignment explanation


    Indices: 1002--1038  Score: 58
    Period size: 16  Copynumber: 2.4  Consensus size: 16

        992 TTTTTTTTCA

                            
       1002 TTTTTTCGTGTTAATT
          1 TTTTTTCGTGTTAATT

             *              
       1018 TCTTTTCGTGTT-ATT
          1 TTTTTTCGTGTTAATT

                  
       1033 TTTTTT
          1 TTTTTT

       1039 TTACCTCGTC


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  15    8  0.42
  16   11  0.58

ACGTcount: A:0.08, C:0.08, G:0.11, T:0.73


Consensus pattern (16 bp):   
TTTTTTCGTGTTAATT
Done.