Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4278

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 332

Length: 554
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26


Found at i:186 original size:38 final size:38

Alignment explanation


    Indices: 143--237  Score: 124
    Period size: 38  Copynumber: 2.5  Consensus size: 38

        133 ATACTATAAT

                                   *               
        143 AGTCATCATTGTTGGGCAACTTGGGGTGAC-ATACTTTA
          1 AGTCATCATTGTTGGGCAACTT-AGGTGACAATACTTTA

                                                    
        181 AGTCATCATTTGTT-GG-AACTTAGGTGACATATACTTTA
          1 AGTCATCA-TTGTTGGGCAACTTAGGTGACA-ATACTTTA

                      *        
        219 AGTCATCATTTTTGGGCAA
          1 AGTCATCATTGTTGGGCAA

        238 TCCAAGGTGG


Statistics
Matches: 50,  Mismatches: 2, Indels: 9
        0.82            0.03        0.15

Matches are distributed among these distances:
  36    6  0.12
  37    9  0.18
  38   28  0.56
  39    7  0.14

ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37


Consensus pattern (38 bp):   
AGTCATCATTGTTGGGCAACTTAGGTGACAATACTTTA
Done.