Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2128

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1086
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38


Found at i:415 original size:17 final size:17

Alignment explanation


    Indices: 389--423  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        379 TATATATATC

                        *    
        389 TAAAACAAATAATTAAA
          1 TAAAACAAATAAATAAA

                 *           
        406 TAAAATAAATAAATAAA
          1 TAAAACAAATAAATAAA

             
        423 T
          1 T

        424 GATGACAATT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26


Consensus pattern (17 bp):   
TAAAACAAATAAATAAA
Done.