Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1476

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1671
ACGTcount: A:0.17, C:0.15, G:0.12, T:0.22

Warning! 566 characters in sequence are not A, C, G, or T


Found at i:953 original size:9 final size:9

Alignment explanation


    Indices: 941--965  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        931 TCTCTTTGCG

                     
        941 TCCTTTCCA
          1 TCCTTTCCA

                     
        950 TCCTTTCCA
          1 TCCTTTCCA

                   
        959 TCCTTTC
          1 TCCTTTC

        966 ATTGAGTTCG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.08, C:0.44, G:0.00, T:0.48


Consensus pattern (9 bp):   
TCCTTTCCA
Done.