Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1027

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3251
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36


Found at i:33 original size:20 final size:21

Alignment explanation


    Indices: 4--45  Score: 59
    Period size: 20  Copynumber: 2.0  Consensus size: 21

          1 TTT

                                 
          4 ACAATATTTAA-AAATTTCTA
          1 ACAATATTTAATAAATTTCTA

                 *        *      
         24 ACAATTTTTAATAATTTTCTA
          1 ACAATATTTAATAAATTTCTA

             
         45 A
          1 A

         46 AGTATATGAC


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  20   10  0.53
  21    9  0.47

ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45


Consensus pattern (21 bp):   
ACAATATTTAATAAATTTCTA

Done.