Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1707

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 40699
ACGTcount: A:0.02, C:0.01, G:0.01, T:0.02

Warning! 38793 characters in sequence are not A, C, G, or T


Found at i:40048 original size:20 final size:20

Alignment explanation


    Indices: 40006--40048  Score: 52
    Period size: 20  Copynumber: 2.1  Consensus size: 20

      39996 TTTTCTTTTC

                              * 
      40006 TTAATTTTAAGTTTTATTTA
          1 TTAATTTTAAGTTTTATTAA

                     *           
      40026 TTAATTTTATGTTATT-TTAA
          1 TTAATTTTAAGTT-TTATTAA

               
      40046 TTA
          1 TTA

      40049 CAAACTTTAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  20   18  0.90
  21    2  0.10

ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65


Consensus pattern (20 bp):   
TTAATTTTAAGTTTTATTAA
Done.