Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4038

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 360

Length: 601
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26


Found at i:544 original size:132 final size:132

Alignment explanation


    Indices: 325--599  Score: 361
    Period size: 132  Copynumber: 2.1  Consensus size: 132

        315 CCTATTTCTC

                      *                                 *  *                 
        325 TGAGCAGCAGTGGAGAAGGTTGAAGACTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
          1 TGAGCAGCAGCGGAGAAGGTTGAAGACTGTAGATCTTATCTCCCAAAACAGTAGTGGAGCAGATC

            *     * *  *                      *                 *     *      
        390 GAAGACGGCAAGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGCCTC
         66 AAAGACAGAAAATCTTATCTTTCCAAGATAGTGGAAAGCAGATTTAAGCCACAAAGCCGTGCCTC

              
        455 CT
        131 CT

                           **         *                                **    
        457 TGAGCAGCAGCGGAGTTGGTTGAAGATTGTAGATCTTATCTCCCAAAACAGTAGTGGAGTTGATC
          1 TGAGCAGCAGCGGAGAAGGTTGAAGACTGTAGATCTTATCTCCCAAAACAGTAGTGGAGCAGATC

                 *                 *              *                 *    *   
        522 AAAGATAGAAAATCTTATCTTTCTAAGATAGTGGAAAGTAGATTTAAGCCACAAAGTCGTGTCTC
         66 AAAGACAGAAAATCTTATCTTTCCAAGATAGTGGAAAGCAGATTTAAGCCACAAAGCCGTGCCTC

            * 
        587 TT
        131 CT

                       
        589 TGAGCAGCAGC
          1 TGAGCAGCAGC

        600 AG


Statistics
Matches: 122,  Mismatches: 21, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
 132  122  1.00

ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26


Consensus pattern (132 bp):   
TGAGCAGCAGCGGAGAAGGTTGAAGACTGTAGATCTTATCTCCCAAAACAGTAGTGGAGCAGATC
AAAGACAGAAAATCTTATCTTTCCAAGATAGTGGAAAGCAGATTTAAGCCACAAAGCCGTGCCTC
CT
Done.