Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3090

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 480

Length: 800
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.34


Found at i:219 original size:25 final size:25

Alignment explanation


    Indices: 191--262  Score: 94
    Period size: 25  Copynumber: 2.9  Consensus size: 25

        181 CATCAGAGAG

                                  *  
        191 CGTGCTAATATTCAGAGAGCACTGA
          1 CGTGCTAATATTCAGAGAGCACCGA

                                      
        216 CGTGCTAA-ATATCAGAGAGCACCGA
          1 CGTGCTAATAT-TCAGAGAGCACCGA

            *                      
        241 TGTGCTAATAATT-AGAGAGCAC
          1 CGTGCTAAT-ATTCAGAGAGCAC

        263 GCTAAACTCC


Statistics
Matches: 42,  Mismatches: 2, Indels: 6
        0.84            0.04        0.12

Matches are distributed among these distances:
  24    2  0.05
  25   37  0.88
  26    1  0.02
  27    2  0.05

ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22


Consensus pattern (25 bp):   
CGTGCTAATATTCAGAGAGCACCGA
Done.