Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1350

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1955
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.30

Warning! 125 characters in sequence are not A, C, G, or T


Found at i:383 original size:14 final size:14

Alignment explanation


    Indices: 364--402  Score: 51
    Period size: 14  Copynumber: 2.8  Consensus size: 14

        354 ATCAAAATTC

                  *      *
        364 AAGATGTCGGCAAG
          1 AAGATGGCGGCAAA

                      *   
        378 AAGATGGCGGAAAA
          1 AAGATGGCGGCAAA

                       
        392 AAGATGGCGGC
          1 AAGATGGCGGC

        403 CTTAATTTGT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  14   21  1.00

ACGTcount: A:0.38, C:0.13, G:0.38, T:0.10


Consensus pattern (14 bp):   
AAGATGGCGGCAAA
Done.