Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2291

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1001
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30


Found at i:127 original size:17 final size:17

Alignment explanation


    Indices: 101--133  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

         91 CATTGTTCGC

                             
        101 ACATAAGTAAGGTTTGT
          1 ACATAAGTAAGGTTTGT

                 *          
        118 ACATAGGTAAGGTTTG
          1 ACATAAGTAAGGTTTG

        134 CACACAACAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.33, C:0.06, G:0.27, T:0.33


Consensus pattern (17 bp):   
ACATAAGTAAGGTTTGT

Found at i:229 original size:16 final size:16

Alignment explanation


    Indices: 203--236  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        193 CTCGCCTATG

                             
        203 GGTATGGCTCGCATGAA
          1 GGTATGGCTCGCAT-AA

                            
        220 GGTA-GGCTCGCATAA
          1 GGTATGGCTCGCATAA

              
        235 GG
          1 GG

        237 GTTTGGCTAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    4  0.24
  16    9  0.53
  17    4  0.24

ACGTcount: A:0.24, C:0.18, G:0.38, T:0.21


Consensus pattern (16 bp):   
GGTATGGCTCGCATAA
Done.