Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1663

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 856

Length: 1428
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.26

Warning! 219 characters in sequence are not A, C, G, or T


Found at i:132 original size:57 final size:57

Alignment explanation


    Indices: 62--175  Score: 219
    Period size: 57  Copynumber: 2.0  Consensus size: 57

         52 ATATATTGCA

                                                                     
         62 TGGATAAGATAGGGCTATGTCTTTTCATGTCGGGCTGACATAGTTTCAATAATCGGG
          1 TGGATAAGATAGGGCTATGTCTTTTCATGTCGGGCTGACATAGTTTCAATAATCGGG

                  *                                                  
        119 TGGATATGATAGGGCTATGTCTTTTCATGTCGGGCTGACATAGTTTCAATAATCGGG
          1 TGGATAAGATAGGGCTATGTCTTTTCATGTCGGGCTGACATAGTTTCAATAATCGGG

        176 CAGCTGGTAG


Statistics
Matches: 56,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  57   56  1.00

ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34


Consensus pattern (57 bp):   
TGGATAAGATAGGGCTATGTCTTTTCATGTCGGGCTGACATAGTTTCAATAATCGGG
Done.