Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2433

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 567

Length: 946
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.35


Found at i:944 original size:41 final size:41

Alignment explanation


    Indices: 837--946  Score: 166
    Period size: 41  Copynumber: 2.7  Consensus size: 41

        827 GAGTTTACGT

                                     *             **
        837 CTAGCAGGCTAAGTGCCGGTGATCTAAAACAGGCTATAAGT
          1 CTAGCAGGCTAAGTGCCGGTGATCTGAAACAGGCTATAAAC

                                       **    *       
        878 CTAGCAGGCTAAGTGCCGGTGATCTGACTCAGGTTATAAAC
          1 CTAGCAGGCTAAGTGCCGGTGATCTGAAACAGGCTATAAAC

                                        
        919 CTAGCAGGCTAAGTGCCGGTGATCTGAA
          1 CTAGCAGGCTAAGTGCCGGTGATCTGAA


Statistics
Matches: 62,  Mismatches: 7, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  41   62  1.00

ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23


Consensus pattern (41 bp):   
CTAGCAGGCTAAGTGCCGGTGATCTGAAACAGGCTATAAAC
Done.