Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1596

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 900

Length: 1501
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28


Found at i:458 original size:35 final size:35

Alignment explanation


    Indices: 419--488  Score: 140
    Period size: 35  Copynumber: 2.0  Consensus size: 35

        409 GCAATGCGCC

                                               
        419 ATATTTAATATAGATCAAGTATGATAGCAATTAAT
          1 ATATTTAATATAGATCAAGTATGATAGCAATTAAT

                                               
        454 ATATTTAATATAGATCAAGTATGATAGCAATTAAT
          1 ATATTTAATATAGATCAAGTATGATAGCAATTAAT

        489 GCACTAATAC


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   35  1.00

ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37


Consensus pattern (35 bp):   
ATATTTAATATAGATCAAGTATGATAGCAATTAAT

Found at i:1456 original size:22 final size:23

Alignment explanation


    Indices: 1414--1456  Score: 63
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       1404 CAGGTTCGAG

                                   
       1414 ATGGAAAATAATATTTCACAACA
          1 ATGGAAAATAATATTTCACAACA

                                  
       1437 ATGGAGAAA-AATA-TTCACAA
          1 ATGGA-AAATAATATTTCACAA

       1457 ATGGAATAAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  22    7  0.37
  23    9  0.47
  24    3  0.16

ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23


Consensus pattern (23 bp):   
ATGGAAAATAATATTTCACAACA
Done.