Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold701
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9431
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.30
Warning! 1141 characters in sequence are not A, C, G, or T
Found at i:3442 original size:108 final size:107
Alignment explanation
Indices: 2988--3444 Score: 568
Period size: 108 Copynumber: 4.2 Consensus size: 107
2978 GGAAAAAGAA
* * * * *
2988 GAAAAAGGAAAAAAACATTTTTTTTGGGTGCTGGCCTGTCAATGGCTGGTACCTAGTACAATTAA
1 GAAAAAAGTAAAAAA-ATTTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCTAGTACAATTAT
*
3053 AAAAAATTAC--TTTTTTCATGTCAGAATCAGATATCAGTATAC
65 AAAAAATT-CTTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
* * *
3095 GAAAAAAATAAAAAAA---ATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCTAGTACAATTTAA
1 GAAAAAAGTAAAAAAATTTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCTAGTACAA-TTAT
3157 AAAAAATTCTTTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
65 AAAAAATTC-TTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
* *
3201 AAAAAAAGTAAAAAAAATAATTTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCGAGTACAAT
1 GAAAAAAGT---AAAAA-AATTTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCTAGTACAAT
** * * * *
3266 TATAAAATTTTTTTTCCTTTTTTCGTGTAAGAATCAGATATTAGTATAA
62 TATAAAA-AATTCTT--TTTTTTCGTGTCAGAATCAGATATCAGTATAC
* *
3315 GTAAAAAGT--AAAAATTTTTTTTGGGTGCTGGCCTGTTAATGGCCGGCACCTAGTACAATTATA
1 GAAAAAAGTAAAAAAATTTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCTAGTACAATTATA
* *
3378 AAAAAGTCTTTTTTTTCGTGTCAGAATTAGATATCAGTATAC
66 AAAAATTCTTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
3420 GAAAAAAGTAAAAAAATCTTTTTTT
1 GAAAAAAGTAAAAAAAT-TTTTTTT
3445 CGTGTCAGAA
Statistics
Matches: 302, Mismatches: 31, Indels: 33
0.83 0.08 0.09
Matches are distributed among these distances:
103 39 0.13
104 12 0.04
105 36 0.12
106 39 0.13
107 21 0.07
108 59 0.20
109 8 0.03
110 2 0.01
112 9 0.03
113 41 0.14
114 36 0.12
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (107 bp):
GAAAAAAGTAAAAAAATTTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCTAGTACAATTATA
AAAAATTCTTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
Found at i:3987 original size:109 final size:109
Alignment explanation
Indices: 3762--4455 Score: 788
Period size: 106 Copynumber: 6.4 Consensus size: 109
3752 ATTAGAAGGT
* * * ** *
3762 GGTGCCGGCCATTGACAGACCAGTACCAAAAAGATTTTTATTTTACTTTTTTCGTATACTGATAT
1 GGTGCCGGCCATTGACAGGCCAGCACC-CAAATTTTTTTTTTTTAC-TTTTTCGTATACTGATAT
* *
3827 CTGATTCTGACACGAAAAAAAATAAAAAAAAATTTATAATTGTACTG
64 CTGATTCTGACACG-AAAAAAAGAAAAAAAATTTTATAATTGTACTG
* * * *
3874 GGTGCCGACCATTGACAGACCAGCA-CCAAATTTTTTTTTTTTACTTTTTACTTATACTAATATC
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTTTACTTTTT-CGTATACTGATATC
* * *
3938 TGATTCTTACACGAAAAAAGGAAAAAAAATTTTATAATTGTACTC
65 TGATTCTGACACGAAAAAAAGAAAAAAAATTTTATAATTGTACTG
* * *
3983 GGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAATTATTTTTTTTACTTTTTTTGTATACTGA
1 GGTGCCGGCCATTGACAGGCCAGCACCC----AAATTTTTTTTTTTTAC-TTTTTCGTATACTGA
****
4048 TATCTGATTCTGACACGAAAAAAATG---ATTTTTTTTATAATTGTACTG
61 TATCTGATTCTGACACGAAAAAAA-GAAAAAAAATTTTATAATTGTACTG
* *
4095 GATGCCGGCCATTGACAGGCTAGCACCCAAA--TTTTTTTTTTACTTTTTTCGTATACTGATATC
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTTTAC-TTTTTCGTATACTGATATC
4158 TGATTCTGACACGAAAGAAAAGAAAAAAAAATTTTA-AATTGTACTG
65 TGATTCTGACACGAAA-AAAAG-AAAAAAAATTTTATAATTGTACTG
* *
4204 GGTGCCAGCCATTGACAGGCCAACACCC-AA-TTTTTTTTTTTACTTTTTCCGTATACTGATATC
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTTTACTTTTT-CGTATACTGATATC
* * * *** * *
4267 TGATTCTAACATG-AAAAAA-AAGAATTTTTTTAAAATCGTACTG
65 TGATTCTGACACGAAAAAAAGAAAAAAAATTTTATAATTGTACTG
* * *
4310 GGTGCCGGCCATTGACAAGCCAACACCCAAATTTTTTTTTATT--TTTTTCGTATACTGATATCT
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTTTACTTTTTCGTATACTGATATCT
**
4373 GATTCTGACACGAAAAAAAGTAAAAAAAA-AAT-TAATTGTACTG
66 GATTCTGACACGAAAAAAAG-AAAAAAAATTTTATAATTGTACTG
*
4416 GGTGCCGGCCATTGACAGGCCAACACCCAAATTTTTTTTT
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTT
4456 CCTTTTTCTT
Statistics
Matches: 501, Mismatches: 60, Indels: 48
0.82 0.10 0.08
Matches are distributed among these distances:
105 34 0.07
106 141 0.28
107 11 0.02
108 26 0.05
109 127 0.25
110 46 0.09
111 1 0.00
112 65 0.13
114 44 0.09
115 6 0.01
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35
Consensus pattern (109 bp):
GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTTTACTTTTTCGTATACTGATATCT
GATTCTGACACGAAAAAAAGAAAAAAAATTTTATAATTGTACTG
Found at i:4162 original size:106 final size:106
Alignment explanation
Indices: 3762--4455 Score: 770
Period size: 109 Copynumber: 6.4 Consensus size: 106
3752 ATTAGAAGGT
* ** * *
3762 GGTGCCGGCCATTGACAGACCAGTACCAAAAAGATTTTTATTTTACTTTTTTCGTATACTGATAT
1 GGTGCCGGCCATTGACAGGCCAACACC--CAA-ATTTTTTTTTTACTTTTTTCGTATACTGATAT
* *
3827 CTGATTCTGACACGAAAAAAAATAAAAAAAAATTTATAATTGTACTG
63 CTGATTCTGACACG--AAAAAA-AGAAAAAATTTTATAATTGTACTG
* * * * * *
3874 GGTGCCGACCATTGACAGACCAGCA-CCAAATTTTTTTTTTTTACTTTTTACTTATACTAATATC
1 GGTGCCGGCCATTGACAGGCCAACACCCAAA--TTTTTTTTTTACTTTTTTCGTATACTGATATC
* * *
3938 TGATTCTTACACGAAAAAAGGAAAAAAAATTTTATAATTGTACTC
64 TGATTCTGACACGAAAAAA--AGAAAAAATTTTATAATTGTACTG
* *
3983 GGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAATTATTTTTTTTACTTTTTTTGTATACTGA
1 GGTGCCGGCCATTGACAGGCCAACACCC-----AAATT-TTTTTTTTACTTTTTTCGTATACTGA
****
4048 TATCTGATTCTGACACGAAAAAAATG-ATTTTTTTTATAATTGTACTG
60 TATCTGATTCTGACACGAAAAAAA-GAAAAAATTTTATAATTGTACTG
* * *
4095 GATGCCGGCCATTGACAGGCTAGCACCCAAATTTTTTTTTTACTTTTTTCGTATACTGATATCTG
1 GGTGCCGGCCATTGACAGGCCAACACCCAAATTTTTTTTTTACTTTTTTCGTATACTGATATCTG
4160 ATTCTGACACGAAAGAAAAGAAAAAAAAATTTTA-AATTGTACTG
66 ATTCTGACACGAAA-AAAAG---AAAAAATTTTATAATTGTACTG
* * *
4204 GGTGCCAGCCATTGACAGGCCAACACCCAATTTTTTTTTTTACTTTTTCCGTATACTGATATCTG
1 GGTGCCGGCCATTGACAGGCCAACACCCAAATTTTTTTTTTACTTTTTTCGTATACTGATATCTG
* * *** * *
4269 ATTCTAACATGAAAAAAA-AGAATTTTTTTAAAATCGTACTG
66 ATTCTGACACGAAAAAAAGA-AAAAATTTTATAATTGTACTG
* *
4310 GGTGCCGGCCATTGACAAGCCAACACCCAAA-TTTTTTTTTATTTTTTTCGTATACTGATATCTG
1 GGTGCCGGCCATTGACAGGCCAACACCCAAATTTTTTTTTTACTTTTTTCGTATACTGATATCTG
***
4374 ATTCTGACACGAAAAAAAGTAAAAAA-AAAATTAATTGTACTG
66 ATTCTGACACGAAAAAAAG-AAAAAATTTTA-TAATTGTACTG
4416 GGTGCCGGCCATTGACAGGCCAACACCCAAATTTTTTTTT
1 GGTGCCGGCCATTGACAGGCCAACACCCAAATTTTTTTTT
4456 CCTTTTTCTT
Statistics
Matches: 501, Mismatches: 59, Indels: 49
0.82 0.10 0.08
Matches are distributed among these distances:
104 1 0.00
105 55 0.11
106 124 0.25
107 18 0.04
108 11 0.02
109 128 0.26
110 48 0.10
111 1 0.00
112 66 0.13
113 2 0.00
114 44 0.09
115 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35
Consensus pattern (106 bp):
GGTGCCGGCCATTGACAGGCCAACACCCAAATTTTTTTTTTACTTTTTTCGTATACTGATATCTG
ATTCTGACACGAAAAAAAGAAAAAATTTTATAATTGTACTG
Found at i:4185 original size:221 final size:219
Alignment explanation
Indices: 3762--4446 Score: 890
Period size: 221 Copynumber: 3.1 Consensus size: 219
3752 ATTAGAAGGT
* ** * *
3762 GGTGCCGGCCATTGACAGACCAGTA-CCAAAAAGATTTTTATTTTACTTTTTTCGTATACTGATA
1 GGTGCCGGCCATTGACAGGCCAACACCCAAAAAAATTTTTTTTTTACTTTTTTCGTATACTGATA
* **** *
3826 TCTGATTCTGACACGAAAAAAAATAAAAAAAAATTTATAATTGTACTGGGTGCCGACCATTGACA
66 TCTGATTCTGACACG-AAAAAAAT--GAATTTTTTTATAATTGTACTGGGTGCCGGCCATTGACA
* * * * *
3891 GACCAGCA-CCAAATTTTTTTTTTTTACTTTTTACTTATACTAATATCTGATTCTTACACG-AAA
128 GGCCAGCACCCAAA--TTTTTTTTTTACTTTTTTCGTATACTGATATCTGATTCTGACACGAAAA
* *
3954 AAAGGAAAAAAAATTTTATAATTGTACTC
191 AAAGAAAAAAAAATTTTATAATTGTACTG
* *
3983 GGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAATTATTTTTTTTACTTTTTTTGTATACTGA
1 GGTGCCGGCCATTGACAGGCCAACACCC-AAAAAAATT-TTTTTTTTACTTTTTTCGTATACTGA
* *
4048 TATCTGATTCTGACACGAAAAAAATGATTTTTTTTATAATTGTACTGGATGCCGGCCATTGACAG
64 TATCTGATTCTGACACGAAAAAAATGAATTTTTTTATAATTGTACTGGGTGCCGGCCATTGACAG
*
4113 GCTAGCACCCAAATTTTTTTTTTACTTTTTTCGTATACTGATATCTGATTCTGACACGAAAGAAA
129 GCCAGCACCCAAATTTTTTTTTTACTTTTTTCGTATACTGATATCTGATTCTGACACGAAA-AAA
4178 AGAAAAAAAAATTTTA-AATTGTACTG
193 AGAAAAAAAAATTTTATAATTGTACTG
* * *
4204 GGTGCCAGCCATTGACAGGCCAACACCC----AATTTTTTTTTTTACTTTTTCCGTATACTGATA
1 GGTGCCGGCCATTGACAGGCCAACACCCAAAAAAATTTTTTTTTTACTTTTTTCGTATACTGATA
* * * * * *
4265 TCTGATTCTAACATGAAAAAAAAGAATTTTTTTAAAATCGTACTGGGTGCCGGCCATTGACAAGC
66 TCTGATTCTGACACGAAAAAAATGAATTTTTTTATAATTGTACTGGGTGCCGGCCATTGACAGGC
* *
4330 CAACACCCAAA-TTTTTTTTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAGT
131 CAGCACCCAAATTTTTTTTTTACTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAG-
*
4394 AAAAAAAAA--AT-TAATTGTACTG
195 AAAAAAAAATTTTATAATTGTACTG
4416 GGTGCCGGCCATTGACAGGCCAACACCCAAA
1 GGTGCCGGCCATTGACAGGCCAACACCCAAA
4447 TTTTTTTTTC
Statistics
Matches: 414, Mismatches: 39, Indels: 28
0.86 0.08 0.06
Matches are distributed among these distances:
212 38 0.09
213 5 0.01
214 55 0.13
215 92 0.22
216 4 0.01
220 41 0.10
221 97 0.23
222 25 0.06
223 16 0.04
224 41 0.10
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (219 bp):
GGTGCCGGCCATTGACAGGCCAACACCCAAAAAAATTTTTTTTTTACTTTTTTCGTATACTGATA
TCTGATTCTGACACGAAAAAAATGAATTTTTTTATAATTGTACTGGGTGCCGGCCATTGACAGGC
CAGCACCCAAATTTTTTTTTTACTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAGA
AAAAAAAATTTTATAATTGTACTG
Found at i:7954 original size:11 final size:10
Alignment explanation
Indices: 7940--7993 Score: 63
Period size: 10 Copynumber: 5.1 Consensus size: 10
7930 ATTTTTTTCC
7940 CTTTTTTATTT
1 CTTTTTT-TTT
7951 CTTTTTTCTTT
1 CTTTTTT-TTT
*
7962 CTCTTTTTCTT
1 CT-TTTTTTTT
7973 CTTTTTTTTT
1 CTTTTTTTTT
*
7983 CTTCTTTTTT
1 CTTTTTTTTT
7993 C
1 C
7994 CTTATTTCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
10 17 0.45
11 16 0.42
12 5 0.13
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.80
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:7968 original size:22 final size:22
Alignment explanation
Indices: 7949--8020 Score: 78
Period size: 22 Copynumber: 3.2 Consensus size: 22
7939 CCTTTTTTAT
7949 TTCTTTTTTCTTTC-TCTTTTTC
1 TTCTTTTTT-TTTCTTCTTTTTC
7971 TTCTTTTTTTTTCTTCTTTTT-
1 TTCTTTTTTTTTCTTCTTTTTC
*
7992 TCCTTATTTCCTTTT-TTCTTTTTC
1 TTCTT-TTT--TTTTCTTCTTTTTC
8016 TTCTT
1 TTCTT
8021 CGGGCTGAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
21 8 0.19
22 19 0.44
23 8 0.19
24 8 0.19
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (22 bp):
TTCTTTTTTTTTCTTCTTTTTC
Found at i:8014 original size:32 final size:32
Alignment explanation
Indices: 7933--8020 Score: 101
Period size: 32 Copynumber: 2.8 Consensus size: 32
7923 CTGTGATATT
* * *
7933 TTTTTCCCTTTTTTATTTCTTTTTTCTTTCTC
1 TTTTTCCTTTTTTTTTTTCTTCTTTCTTTCTC
7965 TTTTT-CTTCTTTTTTTTTCTTCTTT-TTTC-C
1 TTTTTCCTT-TTTTTTTTTCTTCTTTCTTTCTC
7995 TTATTTCCTTTTTTCTTTTTCTTCTT
1 TT-TTTCCTTTTTT-TTTTTCTTCTT
8021 CGGGCTGAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
30 3 0.06
31 13 0.27
32 33 0.67
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.77
Consensus pattern (32 bp):
TTTTTCCTTTTTTTTTTTCTTCTTTCTTTCTC
Found at i:8020 original size:35 final size:35
Alignment explanation
Indices: 7949--8021 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 35
7939 CCTTTTTTAT
* *
7949 TTCTTTTTTCTTTCTCTTTTTCTTCTTTTTTTTTC
1 TTCTTTTTTCTTTCTCCTTTTCTTCTTTTTTCTTC
*
7984 TTCTTTTTTCCTTATTTCCTTTT-TTC-TTTTTCTTC
1 TTCTTTTTT-CTT-TCTCCTTTTCTTCTTTTTTCTTC
8019 TTC
1 TTC
8022 GGGCTGAACC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
35 20 0.61
36 6 0.18
37 7 0.21
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.77
Consensus pattern (35 bp):
TTCTTTTTTCTTTCTCCTTTTCTTCTTTTTTCTTC
Found at i:8139 original size:21 final size:21
Alignment explanation
Indices: 8101--8162 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
8091 GCCTCCCTTC
*
8101 TCTTCCTCTCTCTCTCTTTTCTT
1 TCTT-CTCT-TCTTTCTTTTCTT
8124 TCTTCTCTTCTTTCTTTTCTT
1 TCTTCTCTTCTTTCTTTTCTT
*
8145 TCTTCTCTTCCTTCTTTT
1 TCTTCTCTTCTTTCTTTT
8163 TGGCTGCTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 29 0.78
22 4 0.11
23 4 0.11
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (21 bp):
TCTTCTCTTCTTTCTTTTCTT
Found at i:8158 original size:4 final size:5
Alignment explanation
Indices: 8097--8159 Score: 52
Period size: 4 Copynumber: 14.0 Consensus size: 5
8087 GCGCGCCTCC
*
8097 CTTCT CTTC- C-TCT CTCTCT CTTTT CTT-T CTTCT CTTCT -TTCT -TT-T
1 CTTCT CTTCT CTTCT CT-TCT CTTCT CTTCT CTTCT CTTCT CTTCT CTTCT
8142 CTT-T CTTCT CTTC- CTTCT
1 CTTCT CTTCT CTTCT CTTCT
8160 TTTTGGCTGC
Statistics
Matches: 50, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
3 3 0.06
4 22 0.44
5 20 0.40
6 5 0.10
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (5 bp):
CTTCT
Found at i:8674 original size:30 final size:31
Alignment explanation
Indices: 8638--8725 Score: 94
Period size: 31 Copynumber: 2.9 Consensus size: 31
8628 GTTAAAGGGA
*
8638 AATTTTAAGAAAATTTAAGGGCCGAAATGT-
1 AATTTTAAGAAAATTTAAGGGCCAAAATGTG
* *
8668 AATTTT-AGAAAATTT-TGGGTCAAAATGTG
1 AATTTTAAGAAAATTTAAGGGCCAAAATGTG
* *
8697 AATTTTAAAAAAAATTT-AGGGTCAAAATG
1 AATTTT-AAGAAAATTTAAGGGCCAAAATG
8726 GAAATTTCAA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
28 10 0.20
29 15 0.30
30 6 0.12
31 19 0.38
ACGTcount: A:0.44, C:0.05, G:0.18, T:0.33
Consensus pattern (31 bp):
AATTTTAAGAAAATTTAAGGGCCAAAATGTG
Found at i:8719 original size:31 final size:30
Alignment explanation
Indices: 8638--8738 Score: 100
Period size: 29 Copynumber: 3.4 Consensus size: 30
8628 GTTAAAGGGA
* * *
8638 AATTTTAAGAAAATTTAAGGGCCGAAATGT-
1 AATTTTAAAAAAATTT-AGGGTCAAAATGTG
* *
8668 AATTTT-AGAAAATTTTGGGTCAAAATGTG
1 AATTTTAAAAAAATTTAGGGTCAAAATGTG
8697 AATTTTAAAAAAAATTTAGGGTCAAAATG-G
1 AATTTT-AAAAAAATTTAGGGTCAAAATGTG
* *
8727 AAATTTCAAAAA
1 AATTTTAAAAAA
8739 GTATAGGGGT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
28 10 0.16
29 20 0.33
30 12 0.20
31 19 0.31
ACGTcount: A:0.47, C:0.05, G:0.17, T:0.32
Consensus pattern (30 bp):
AATTTTAAAAAAATTTAGGGTCAAAATGTG
Found at i:9414 original size:75 final size:73
Alignment explanation
Indices: 9105--9431 Score: 278
Period size: 75 Copynumber: 4.3 Consensus size: 73
9095 TCTCAGATTG
** * * * * * *
9105 TGAGTTGACCTTTGAAAAATAGATATTGAAAGTACCTCAGCGTAACCCGAGGCTCAACGCACCTC
1 TGAGTTGATTTTTGAAAAACAGAAATTTAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTC
*
9170 TCGCATTA
66 TCGCAATA
* * * * **
9178 TGAGTTAATTTTTTTTGAAAAACGGAAATTTAAAAGAAATACCCCGGCATGTGACCTAAGGCTCA
1 TGAGTTGA---TTTTTGAAAAACAGAAATTT---A-AAATACCTCAGC--GTGACCCGAGGCTCA
*
9243 ACTCACCTCTTGCAATA
57 ACTCACCTCTCGCAATA
* * * * * * *
9260 TGAGTTGGTTTTTGTGAAAACCAAAAATTGAAAAATACCTC-GACATGACTCGATGCTCAACTCA
1 TGAGTT-GATTTT-TGAAAAACAGAAATT-TAAAATACCTCAG-CGTGACCCGAGGCTCAACTCA
*
9324 CATCTCGCAATA
62 CCTCTCGCAATA
* *
9336 TGAGTTGATTTTTGAAAAACAGAAATTTAAAATACCTCAGCGTGTGACCCGAGGTTCAATTCACC
1 TGAGTTGATTTTTGAAAAACAGAAATTTAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACC
9401 TCTCGCAATA
64 TCTCGCAATA
9411 TGAGTTGATTTTTGAAAAACA
1 TGAGTTGATTTTTGAAAAACA
Statistics
Matches: 198, Mismatches: 40, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
73 18 0.09
74 14 0.07
75 52 0.26
76 45 0.23
77 1 0.01
78 9 0.05
79 2 0.01
80 13 0.07
81 12 0.06
82 32 0.16
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (73 bp):
TGAGTTGATTTTTGAAAAACAGAAATTTAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTC
TCGCAATA
Done.