Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4427

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 321

Length: 535
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26


Found at i:238 original size:132 final size:132

Alignment explanation


    Indices: 1--533  Score: 798
    Period size: 132  Copynumber: 4.0  Consensus size: 132

                        *                            *        *   *          
          1 TCGAAGACGGCAGATCTTATCTTTCCAAGATAGTGGGAAGCTGATTTAAGGCACTAAGCCTTGTC
          1 TCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTC

                                 *                                           
         66 TCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAATAGTGGAGCA
         66 TCCCTGAGCAGCAGCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTAAGCAATAGTGGAGCA

              
        131 GA
        131 GA

                        *               *                                    
        133 TCGAAGACGGCAGATCTTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTC
          1 TCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTC

                                                                  *          
        198 TCCCTGAGCAGCAGCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
         66 TCCCTGAGCAGCAGCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTAAGCAATAGTGGAGCA

              
        263 GA
        131 GA

                     *                           *   *                       
        265 TCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGCAGCTGATTTAAGTCACCAAGCCTTGTC
          1 TCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTC

               *       *                                     *               
        330 TCCTTGAGCAGGAGCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTGAG-AAGTAGTGGAGC
         66 TCCCTGAGCAGCAGCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTAAGCAA-TAGTGGAGC

               
        394 AGA
        130 AGA

             **   *                     *           *          *  *          
        397 TTAAAGGCGGCAAATCTTATCTTTCCAATATAGTGGGAAGGAGATTTAAGTTACAAAGCCTTGTC
          1 TCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTC

                                    *       *               *        *       
        462 TCCCTGAGCAGCAGCGGCGGAGTGGGTTGAAACTTGTAGATCTTATCTGCCTAAGCAGTAGTGGA
         66 TCCCTGAGCAGCA---GCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTAAGCAATAGTGGA

                 
        527 GCAGA
        128 GCAGA

              
        532 TC
          1 TC

        534 TA


Statistics
Matches: 363,  Mismatches: 33, Indels: 7
        0.90            0.08        0.02

Matches are distributed among these distances:
 131    1  0.00
 132  313  0.86
 135   48  0.13
 136    1  0.00

ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26


Consensus pattern (132 bp):   
TCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTC
TCCCTGAGCAGCAGCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTAAGCAATAGTGGAGCA
GA

Done.