Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2174

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1058
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.36


Found at i:314 original size:16 final size:16

Alignment explanation


    Indices: 293--344  Score: 52
    Period size: 19  Copynumber: 3.1  Consensus size: 16

        283 CCCAGCGGGG

                            
        293 TTCTTTTTCTTTTTTT
          1 TTCTTTTTCTTTTTTT

                               
        309 TTCTTTTTCCCCTTTTTTT
          1 TTCTTTTT---CTTTTTTT

            *       *       
        328 GT-TTTTTGTTTTTTT
          1 TTCTTTTTCTTTTTTT

              
        343 TT
          1 TT

        345 TGTTTTCTCT


Statistics
Matches: 30,  Mismatches: 3, Indels: 7
        0.75            0.08        0.17

Matches are distributed among these distances:
  15    8  0.27
  16    8  0.27
  18    5  0.17
  19    9  0.30

ACGTcount: A:0.00, C:0.13, G:0.04, T:0.83


Consensus pattern (16 bp):   
TTCTTTTTCTTTTTTT
Done.