Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2764

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 512

Length: 854
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31


Found at i:545 original size:53 final size:54

Alignment explanation


    Indices: 464--570  Score: 189
    Period size: 53  Copynumber: 2.0  Consensus size: 54

        454 CATTTTTGAA

                      *                      *                    
        464 TTCCTTGAATTTTTCAAGGGATTCAGACTTATGGCGCATGAGATAGACATACCC
          1 TTCCTTGAATCTTTCAAGGGATTCAGACTTATGACGCATGAGATAGACATACCC

                                                                  
        518 TTCCTTGAA-CTTTCAAGGGATTCAGACTTATGACGCATGAGATAGACATACCC
          1 TTCCTTGAATCTTTCAAGGGATTCAGACTTATGACGCATGAGATAGACATACCC

        571 ATATCTACTG


Statistics
Matches: 51,  Mismatches: 2, Indels: 1
        0.94            0.04        0.02

Matches are distributed among these distances:
  53   42  0.82
  54    9  0.18

ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30


Consensus pattern (54 bp):   
TTCCTTGAATCTTTCAAGGGATTCAGACTTATGACGCATGAGATAGACATACCC
Done.