genome.fa.s2315.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold269
Parameters: 2 7 7 80 10 50 1000
Length:  676002

Tables:   1   2   3   

This is table  2  of  3  ( 296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278241--278391	6	25.7	6	83	4	130	10	5	11	72	1.27
282089--282138	9	5.7	9	79	11	50	80	2	18	0	0.82
282075--282136	20	3.1	20	80	13	65	77	1	20	0	0.85
282066--282152	13	6.1	14	73	18	56	77	1	21	0	0.84
282072--282153	14	5.8	13	74	20	67	78	1	20	0	0.83
282066--282153	27	3.1	28	80	11	99	77	1	21	0	0.84
282078--282153	16	5.0	15	73	10	57	78	1	19	0	0.81
282907--282952	17	2.6	17	83	12	58	30	13	8	47	1.72
283017--283112	17	5.8	17	69	16	85	35	13	12	38	1.83
283006--283073	35	1.9	35	91	5	111	36	13	11	38	1.81
283007--283121	18	6.8	18	70	19	86	36	13	12	37	1.83
283054--283112	30	2.0	29	90	3	91	35	13	11	38	1.82
283142--283190	17	2.8	18	81	6	64	30	14	14	40	1.85
283090--283275	98	1.9	98	95	2	338	30	13	12	43	1.82
283168--283211	21	2.1	21	91	4	72	43	13	9	34	1.76
283141--283219	18	4.3	18	74	16	72	30	16	13	39	1.88
283296--283506	17	11.3	17	70	17	125	32	11	9	46	1.72
283238--283389	65	2.4	60	81	7	151	28	12	9	48	1.73
283227--283331	48	2.3	44	78	6	111	27	12	12	47	1.77
283357--283509	38	4.1	38	80	8	172	36	11	8	43	1.72
283348--283492	73	2.0	72	85	8	195	33	12	8	45	1.72
283357--283508	37	4.1	37	80	5	166	36	11	8	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283572--283613	20	2.1	20	86	8	59	45	7	7	40	1.59
289144--289223	1	80.0	1	70	0	52	85	6	8	0	0.76
289146--289217	8	8.6	8	78	19	60	84	6	8	0	0.77
289146--289217	16	4.3	16	82	5	81	84	6	8	0	0.77
289146--289211	34	1.9	35	87	3	98	84	7	7	0	0.77
290079--291148	76	13.8	76	84	7	1051	28	17	19	34	1.94
290078--291155	154	7.0	153	80	9	973	28	17	19	34	1.94
291209--291251	21	2.0	21	100	0	86	13	18	13	53	1.73
292265--292310	13	3.8	13	75	16	53	73	0	26	0	0.83
292266--292330	10	6.5	10	74	10	53	76	1	21	0	0.86
292272--292339	23	3.1	23	79	14	81	77	1	20	0	0.84
292260--292346	30	3.0	28	78	17	90	77	1	21	0	0.84
293099--293143	17	2.6	16	80	13	54	24	15	11	48	1.77
293206--293308	17	6.3	17	71	15	92	37	13	11	36	1.81
293204--293269	35	1.9	34	87	3	96	37	15	12	34	1.84
293250--293308	30	2.0	29	90	3	91	35	13	11	38	1.82
293205--293317	18	6.8	18	70	19	93	36	15	12	36	1.85
293338--293381	17	2.5	18	81	7	63	22	13	15	47	1.81
293279--293520	106	2.3	106	92	3	391	29	13	12	44	1.81
293501--293549	17	2.9	16	80	11	53	26	14	10	48	1.75
293431--293534	47	2.3	44	80	8	111	25	14	13	46	1.81
293513--293551	17	2.2	18	90	4	62	23	12	10	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293279--293594	106	3.0	104	84	5	298	27	13	12	46	1.79
293579--293727	37	3.9	36	78	7	147	35	12	9	42	1.75
293598--293712	17	6.3	18	71	13	92	38	11	9	40	1.74
293578--293716	76	1.9	74	86	4	199	38	10	8	41	1.71
293776--293817	20	2.1	20	90	0	66	45	4	7	42	1.52
294893--294946	27	2.1	27	86	6	76	50	1	3	44	1.30
302895--303010	38	3.1	38	81	9	141	33	16	26	23	1.95
302921--303010	35	2.5	37	87	9	139	35	14	24	25	1.93
321651--322176	36	14.5	36	82	6	568	36	15	22	25	1.94
321651--322176	74	7.3	72	82	6	557	36	15	22	25	1.94
321649--322176	147	3.6	143	82	7	595	36	15	22	25	1.94
322279--322315	13	2.9	13	96	4	67	51	0	8	40	1.32
324431--324960	140	4.0	127	78	14	548	31	22	20	26	1.98
324548--325011	140	3.3	140	92	0	714	30	22	21	25	1.99
325650--325712	20	3.1	20	84	6	74	63	0	3	33	1.10
328995--329027	13	2.5	13	95	5	57	81	0	15	3	0.80
334038--334064	3	9.0	3	100	0	54	66	0	33	0	0.92
344939--345128	57	3.2	61	70	20	166	41	2	3	52	1.31
345038--345067	15	1.9	16	93	6	53	43	0	6	50	1.28
345059--345093	18	2.0	17	88	5	52	45	0	0	54	0.99
345170--345261	44	2.0	46	91	4	152	36	29	4	29	1.77
345247--345299	16	3.3	16	91	0	88	24	33	3	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346089--346114	12	2.2	12	100	0	52	30	23	38	7	1.83
346232--346298	34	1.9	35	84	3	91	44	13	8	32	1.75
346358--346387	12	2.5	12	88	0	51	30	20	36	13	1.90
346526--346582	23	2.5	23	94	0	96	47	8	28	15	1.75
349028--349079	14	3.5	14	80	14	59	75	3	0	21	0.97
349030--349080	24	2.2	24	89	3	77	76	3	0	19	0.94
357187--357239	20	2.5	22	85	11	76	37	15	7	39	1.75
372045--372090	3	15.3	3	100	0	92	32	34	0	32	1.58
376509--376548	21	1.9	21	89	0	62	12	27	15	45	1.82
378025--378119	49	1.9	49	91	4	156	33	20	10	35	1.87
379952--380023	25	2.8	25	87	4	99	29	4	8	58	1.46
381982--382052	20	3.5	20	86	3	99	36	9	7	46	1.64
382215--382256	22	2.0	20	86	9	57	28	19	9	42	1.82
385804--385848	18	2.5	18	78	7	56	37	2	17	42	1.62
398202--398252	23	2.2	23	85	3	66	56	9	7	25	1.58
398210--398309	23	4.3	24	82	5	98	58	6	3	33	1.38
398210--398329	47	2.6	47	81	4	127	56	5	4	33	1.42
398248--398337	23	4.0	21	76	15	58	54	3	4	37	1.37
399735--400291	193	2.9	191	86	2	713	29	23	17	28	1.97
400198--400424	51	4.5	51	84	6	307	27	25	18	29	1.98
407736--407888	47	3.4	44	76	8	130	54	4	5	34	1.45
407738--407885	23	6.4	23	78	6	122	54	4	6	34	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410343--410393	20	2.6	20	87	3	77	43	9	7	39	1.67
410343--410400	20	3.0	20	82	12	59	39	10	6	43	1.66
415938--415984	17	2.7	18	83	9	62	25	14	8	51	1.71
417983--418050	22	3.0	22	80	2	82	36	23	20	19	1.95
418366--418455	27	3.3	27	83	6	128	24	18	20	36	1.95
418457--418662	27	7.6	27	76	8	177	31	8	18	40	1.81
418509--418661	81	1.9	81	83	2	200	31	6	19	42	1.77
418457--418662	54	3.8	54	77	5	209	31	8	18	40	1.81
423194--423249	24	2.3	23	76	8	58	76	10	3	8	1.12
432431--432494	25	2.6	25	87	0	83	29	20	21	28	1.98
435512--435583	23	3.1	23	75	0	72	43	20	19	16	1.89
438112--438193	42	2.0	42	85	0	110	20	28	24	26	1.99
438251--438318	30	2.3	30	84	0	91	14	32	27	25	1.95
439058--439183	40	3.2	40	85	4	130	37	18	24	19	1.94
439073--439340	40	6.7	40	80	3	252	35	18	27	18	1.94
439111--439340	121	1.9	120	88	0	343	35	18	27	18	1.94
439256--439316	20	3.1	20	72	11	54	32	21	29	16	1.95
446194--446230	18	2.0	19	85	15	51	32	18	5	43	1.73
447027--447160	30	4.6	30	85	2	166	26	23	26	23	2.00
447300--447345	20	2.3	20	84	0	56	43	26	19	10	1.84
447321--447402	26	3.2	26	81	6	94	37	21	21	18	1.94
447331--447428	26	3.8	26	82	5	92	35	22	21	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447530--447664	27	5.0	27	85	1	164	20	14	20	43	1.87
452370--452414	21	2.1	21	83	0	54	15	42	20	22	1.89
452461--452503	21	2.0	21	100	0	86	18	27	13	39	1.89
454417--454548	30	4.5	30	82	6	137	33	21	21	23	1.97
454411--454549	60	2.4	57	81	3	152	31	22	22	23	1.98
454665--454762	26	3.8	26	76	0	97	43	24	15	16	1.86
454675--454788	52	2.2	52	82	3	131	40	22	17	19	1.91
454953--455095	27	5.3	27	79	1	153	21	15	18	44	1.86
454971--455095	53	2.3	54	84	1	171	22	14	18	44	1.85
461623--461849	39	5.8	39	86	1	249	33	18	32	16	1.93

Tables:   1   2   3