Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1553

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1565
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:265 original size:19 final size:19

Alignment explanation


    Indices: 243--281  Score: 69
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        233 CCCTCTTGTT

                    *          
        243 AGGGACTGGCAATGTACTA
          1 AGGGACTGACAATGTACTA

                               
        262 AGGGACTGACAATGTACTA
          1 AGGGACTGACAATGTACTA

             
        281 A
          1 A

        282 CCTTGTTTCA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.36, C:0.15, G:0.28, T:0.21


Consensus pattern (19 bp):   
AGGGACTGACAATGTACTA
Done.