Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4531

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 312

Length: 521
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33


Found at i:479 original size:12 final size:10

Alignment explanation


    Indices: 451--487  Score: 56
    Period size: 10  Copynumber: 3.5  Consensus size: 10

        441 CCATTTTTAC

                      
        451 TTTTTCATTT
          1 TTTTTCATTT

                      
        461 TTTTTCATTT
          1 TTTTTCATTT

                        
        471 TTTCATTCATTT
          1 TTT--TTCATTT

                 
        483 TTTTT
          1 TTTTT

        488 TGTTTGACTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
  10   15  0.60
  12   10  0.40

ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78


Consensus pattern (10 bp):   
TTTTTCATTT
Done.