Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2825

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 505

Length: 842
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33


Found at i:716 original size:83 final size:82

Alignment explanation


    Indices: 569--723  Score: 188
    Period size: 83  Copynumber: 1.9  Consensus size: 82

        559 AATTACCTTA

                 *          *             *     *    *       *               
        569 CTGAATAGAAACGGTGCCGTTTTAAGAAACTTTAATCCATAGTTCTGGCGTTTTCCTGAAAAACG
          1 CTGAAGAGAAACGGTGACGTTTTAAGAAACATTAATACATAATTCTGGCATTTT-CTGAAAAACG

                              
        634 CCACTAAAATTTCAAGTC
         65 CCACTAAAATTTCAAGTC

                                                         *               *   
        652 CTGAAGAGAAACGGTGACGTTTTGAA-AAACATTAATACATAATTGTGGCATTTT-TAGCATAAA
          1 CTGAAGAGAAACGGTGACGTTTT-AAGAAACATTAATACATAATTCTGGCATTTTCT-G-AAAAA

                     
        715 CGCCACTAA
         63 CGCCACTAA

        724 TAGATTACAC


Statistics
Matches: 61,  Mismatches: 8, Indels: 6
        0.81            0.11        0.08

Matches are distributed among these distances:
  81    1  0.02
  82    1  0.02
  83   57  0.93
  84    2  0.03

ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29


Consensus pattern (82 bp):   
CTGAAGAGAAACGGTGACGTTTTAAGAAACATTAATACATAATTCTGGCATTTTCTGAAAAACGC
CACTAAAATTTCAAGTC
Done.