Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1148

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2579
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34


Found at i:869 original size:18 final size:18

Alignment explanation


    Indices: 848--902  Score: 56
    Period size: 18  Copynumber: 2.9  Consensus size: 18

        838 CTCACTCTCC

                              
        848 TTTTTTATTTCTTTTTCT
          1 TTTTTTATTTCTTTTTCT

                **  *         
        866 TTTTCAATCTCTTTTTCT
          1 TTTTTTATTTCTTTTTCT

                               
        884 TTTTCTTCGATTTCTTTTT
          1 TTTT-TT--ATTTCTTTTT

        903 TTCGCTCGCA


Statistics
Matches: 28,  Mismatches: 6, Indels: 3
        0.76            0.16        0.08

Matches are distributed among these distances:
  18   19  0.68
  21    9  0.32

ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75


Consensus pattern (18 bp):   
TTTTTTATTTCTTTTTCT
Done.