Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1273

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2200
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39


Found at i:1768 original size:21 final size:21

Alignment explanation


    Indices: 1742--1784  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1732 GTGGGATTCT

                                 
       1742 AACTTTTTATTAATTAAACTA
          1 AACTTTTTATTAATTAAACTA

                       *         
       1763 AACTTTTTATTCATTAAACTA
          1 AACTTTTTATTAATTAAACTA

             
       1784 A
          1 A

       1785 GTGAGTTGTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.42, C:0.12, G:0.00, T:0.47


Consensus pattern (21 bp):   
AACTTTTTATTAATTAAACTA
Done.