Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1087

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2865
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.36


Found at i:617 original size:24 final size:24

Alignment explanation


    Indices: 585--639  Score: 92
    Period size: 24  Copynumber: 2.3  Consensus size: 24

        575 TCTTCTAGTT

                *                   
        585 AAACGCTATTTATTCGTTTCAATC
          1 AAACTCTATTTATTCGTTTCAATC

                          *         
        609 AAACTCTATTTATTTGTTTCAATC
          1 AAACTCTATTTATTCGTTTCAATC

                   
        633 AAACTCT
          1 AAACTCT

        640 GATTAGTCTA


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   29  1.00

ACGTcount: A:0.31, C:0.20, G:0.05, T:0.44


Consensus pattern (24 bp):   
AAACTCTATTTATTCGTTTCAATC
Done.