genome.fa.s2406.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold505
Parameters: 2 7 7 80 10 50 1000
Length:  116715

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2541--2570	15	1.9	16	93	6	53	63	6	13	16	1.50
7253--7278	7	3.7	7	100	0	52	0	11	0	88	0.52
10006--10054	25	2.0	25	87	0	71	24	28	14	32	1.94
10011--10069	25	2.4	25	82	0	73	25	28	13	32	1.94
24934--24968	6	5.8	6	93	0	61	51	37	0	11	1.38
24932--24969	18	2.1	18	100	0	76	47	42	0	10	1.38
28251--28383	42	3.2	41	78	11	144	42	16	24	16	1.88
28303--28368	21	3.1	22	70	8	57	45	16	22	15	1.85
28311--28375	21	3.1	21	70	12	62	46	15	21	16	1.84
28308--28402	42	2.3	42	83	3	120	43	14	23	18	1.87
30474--30534	22	2.8	21	70	22	54	54	29	0	16	1.43
32517--32617	40	2.5	40	95	0	175	27	23	20	27	1.99
36211--36246	6	6.0	6	100	0	72	50	0	33	16	1.46
41964--42080	62	1.9	59	84	5	153	51	5	3	39	1.43
44988--45028	15	2.7	16	77	7	50	46	0	14	39	1.45
53963--54006	15	2.8	16	76	13	54	36	6	0	56	1.26
54956--55007	23	2.2	24	79	6	61	63	5	1	28	1.28
56947--56971	1	25.0	1	100	0	50	100	0	0	0	0.00
89067--89185	37	3.2	37	67	17	100	36	5	19	38	1.74
92707--92733	12	2.2	12	100	0	54	51	0	7	40	1.30
94861--94917	21	2.7	21	78	13	62	29	7	5	57	1.47
94946--95031	25	3.5	25	71	6	77	39	6	3	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95002--95039	20	1.9	20	88	0	58	36	7	2	52	1.45
103703--104195	44	11.1	44	74	5	375	31	18	24	25	1.98
103712--104177	89	5.2	89	79	5	485	30	19	24	26	1.98
103817--104197	133	2.9	133	93	0	672	31	18	24	25	1.98
104414--104498	44	1.9	45	85	2	118	28	14	27	30	1.95
106102--106142	21	1.9	21	85	5	55	26	2	7	63	1.33
111549--111574	5	5.2	5	100	0	52	38	19	19	23	1.93
112136--112172	9	4.1	9	92	0	65	29	10	13	45	1.77
112227--112268	9	4.7	9	84	0	57	35	21	9	33	1.86

Tables:   1

The End!