Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold903

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4471
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32


Found at i:789 original size:17 final size:17

Alignment explanation


    Indices: 767--800  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        757 GGGACGTACG

                             
        767 TCGCCAACATATTTGGA
          1 TCGCCAACATATTTGGA

                             
        784 TCGCCAACATATTTGGA
          1 TCGCCAACATATTTGGA

        801 GTTTTGTTCT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29


Consensus pattern (17 bp):   
TCGCCAACATATTTGGA

Found at i:2035 original size:26 final size:26

Alignment explanation


    Indices: 2001--2052  Score: 86
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1991 AATAAAAGAA

                              *       
       2001 AACATTCAACATTTCAGTTTAATTAG
          1 AACATTCAACATTTCAGTCTAATTAG

                     *                
       2027 AACATTCAATATTTCAGTCTAATTAG
          1 AACATTCAACATTTCAGTCTAATTAG

       2053 CATTAATTTT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  26   24  1.00

ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38


Consensus pattern (26 bp):   
AACATTCAACATTTCAGTCTAATTAG
Done.