Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3179

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 472

Length: 788
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.40


Found at i:578 original size:15 final size:16

Alignment explanation


    Indices: 549--580  Score: 57
    Period size: 15  Copynumber: 2.1  Consensus size: 16

        539 TATATGATAA

                            
        549 AATTTTATGTTTTATT
          1 AATTTTATGTTTTATT

                            
        565 AATTTTAT-TTTTATT
          1 AATTTTATGTTTTATT

             
        580 A
          1 A

        581 TATATTTAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    8  0.50
  16    8  0.50

ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69


Consensus pattern (16 bp):   
AATTTTATGTTTTATT
Done.