Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1606

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 891

Length: 1486
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34


Found at i:29 original size:14 final size:14

Alignment explanation


    Indices: 10--40  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

          1 TTCTTTTCA

                    *     
         10 CTCTTTTTGTTTTT
          1 CTCTTTTTCTTTTT

                          
         24 CTCTTTTTCTTTTT
          1 CTCTTTTTCTTTTT

               
         38 CTC
          1 CTC

         41 GTTCAATAGA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.00, C:0.23, G:0.03, T:0.74


Consensus pattern (14 bp):   
CTCTTTTTCTTTTT
Done.