Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3437

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 448

Length: 747
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34


Found at i:722 original size:25 final size:26

Alignment explanation


    Indices: 659--731  Score: 89
    Period size: 25  Copynumber: 2.9  Consensus size: 26

        649 ATATTACAAA

                                      
        659 AATATTTATAAAATATTTTT-AACAT
          1 AATATTTATAAAATATTTTTAAACAT

                    *                  
        684 AATA-TTAAACAAATATTTTTAAAC-T
          1 AATATTTATA-AAATATTTTTAAACAT

                   *       *       
        709 AATATTTCTAAAATAATTTTAAA
          1 AATATTTATAAAATATTTTTAAA

        732 ATATTTTTTG


Statistics
Matches: 41,  Mismatches: 4, Indels: 6
        0.80            0.08        0.12

Matches are distributed among these distances:
  24    4  0.10
  25   31  0.76
  26    6  0.15

ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44


Consensus pattern (26 bp):   
AATATTTATAAAATATTTTTAAACAT

Found at i:739 original size:11 final size:11

Alignment explanation


    Indices: 657--739  Score: 58
    Period size: 11  Copynumber: 7.0  Consensus size: 11

        647 AAATATTACA

                     * 
        657 AAAATATTTAT
          1 AAAATATTTTT

                       
        668 AAAATATTTTT
          1 AAAATATTTTT

              *        **
        679 AACATAATATTAA
          1 AAAAT-AT-TTTT

                        
        692 ACAAATATTTTT
          1 A-AAATATTTTT

                        * 
        704 AAACTAATATTTCT
          1 -AA--AATATTTTT

                  *    
        718 AAAATAATTTT
          1 AAAATATTTTT

                       
        729 AAAATATTTTT
          1 AAAATATTTTT

        740 TGTTAAAT


Statistics
Matches: 55,  Mismatches: 11, Indels: 12
        0.71            0.14        0.15

Matches are distributed among these distances:
  11   31  0.56
  12    5  0.09
  13    8  0.15
  14   11  0.20

ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46


Consensus pattern (11 bp):   
AAAATATTTTT
Done.