Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3033

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 483

Length: 806
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.33


Found at i:726 original size:11 final size:12

Alignment explanation


    Indices: 702--743  Score: 50
    Period size: 12  Copynumber: 3.5  Consensus size: 12

        692 TGTAGCTTAG

                   * *  
        702 AAAAAATTGGAA
          1 AAAAAATCGAAA

                        
        714 AAAAAATC-AAA
          1 AAAAAATCGAAA

                        
        725 AAAAAATCGAAA
          1 AAAAAATCGAAA

                   
        737 AGAAAAA
          1 A-AAAAA

        744 AAAATTGGAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  11   10  0.38
  12   11  0.42
  13    5  0.19

ACGTcount: A:0.76, C:0.05, G:0.10, T:0.10


Consensus pattern (12 bp):   
AAAAAATCGAAA
Done.