Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3411

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 450

Length: 751
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27


Found at i:526 original size:14 final size:14

Alignment explanation


    Indices: 503--540  Score: 58
    Period size: 14  Copynumber: 2.7  Consensus size: 14

        493 GTGGAGGACC

                 *        
        503 GGAGGGGGATCGGT
          1 GGAGGTGGATCGGT

                          
        517 GGAGGTGGATCGGT
          1 GGAGGTGGATCGGT

              *       
        531 GGGGGTGGAT
          1 GGAGGTGGAT

        541 TGGGAAATAA


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  14   22  1.00

ACGTcount: A:0.13, C:0.05, G:0.63, T:0.18


Consensus pattern (14 bp):   
GGAGGTGGATCGGT
Done.