Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold582
Parameters: 2 7 7 80 10 50 1000
Length:  29659

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9818--10072
127
2.0
128
97
2
487
23
24
27
25
2.00
10988--11033
23
2.0
23
83
8
58
65
8
8
17
1.45
11275--11314
21
1.9
21
84
0
53
50
2
2
45
1.28
11372--11431
3
19.7
3
83
16
79
66
0
3
30
1.07
11383--11431
18
2.7
18
100
0
98
67
0
4
28
1.09
12920--13084
45
3.6
45
76
8
177
26
23
21
29
1.99
12901--13084
45
3.9
50
74
10
172
27
22
22
28
1.99
12900--13084
95
1.9
95
92
0
307
27
22
22
28
1.99
13066--13102
18
2.1
18
94
0
65
16
27
21
35
1.94
12977--13197
113
2.0
113
95
0
397
25
23
21
30
1.99
13128--14100
45
20.6
45
75
8
805
26
20
21
30
1.98
13084--14109
95
10.9
95
86
3
1220
27
21
21
30
1.98
13128--14102
140
6.9
135
78
8
854
26
20
21
30
1.98
14130--14295
49
3.4
49
72
7
174
21
24
23
30
1.99
14034--14304
99
2.7
99
89
4
395
22
21
23
32
1.98
15442--15547
43
2.5
43
82
3
115
25
28
14
32
1.94
15620--15716
9
9.9
9
72
16
68
0
20
2
77
0.87
15623--15705
6
12.8
6
73
16
51
0
22
1
75
0.87
15637--15716
30
2.8
28
81
9
88
0
20
2
77
0.88
15672--15708
10
3.7
10
85
0
56
0
13
0
86
0.57
20626--20679
21
2.5
22
79
8
58
59
3
0
37
1.15
20836--20903
3
22.0
3
77
16
68
64
2
1
30
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20818--20900
18
4.6
18
78
13
82
65
3
2
28
1.22
20919--20988
30
2.3
31
76
11
74
52
11
22
12
1.71
21696--21738
22
2.0
22
85
0
59
18
6
9
65
1.44
23682--23715
16
2.1
17
88
5
52
67
8
5
17
1.37
24411--24438
11
2.5
11
100
0
56
82
10
0
7
0.85
26553--26589
18
2.1
18
90
10
58
32
0
5
62
1.18
27665--27744
31
2.5
33
76
7
87
38
8
3
48
1.52
27702--27772
26
2.7
27
84
2
90
39
7
4
49
1.49

Tables:   1

The End!