Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3451

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 447

Length: 745
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.28


Found at i:8 original size:3 final size:3

Alignment explanation


    Indices: 1--40  Score: 62
    Period size: 3  Copynumber: 13.3  Consensus size: 3

                                            *           *        
          1 TCA TCA TCA TCA TCA TCA TCA TCA GCA TCA TCA GCA TCA T
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T

         41 ATGATCCACT


Statistics
Matches: 33,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.33, C:0.33, G:0.05, T:0.30


Consensus pattern (3 bp):   
TCA

Done.