Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2972

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 490

Length: 817
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32


Found at i:306 original size:3 final size:3

Alignment explanation


    Indices: 298--323  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

        288 TCTACCGGTT

                                              
        298 TTC TTC TTC TTC TTC TTC TTC TTC TT
          1 TTC TTC TTC TTC TTC TTC TTC TTC TT

        324 ATTCCTCGGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69


Consensus pattern (3 bp):   
TTC

Found at i:783 original size:3 final size:3

Alignment explanation


    Indices: 775--806  Score: 64
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        765 AATTTCTCGA

                                                      
        775 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC

        807 CTCTAAGCGA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66


Consensus pattern (3 bp):   
TCT

Done.