Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1412

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1821
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29


Found at i:1306 original size:42 final size:42

Alignment explanation


    Indices: 1259--1383  Score: 241
    Period size: 42  Copynumber: 3.0  Consensus size: 42

       1249 AATATGTGTG

                                                      
       1259 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA
          1 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA

                                                      
       1301 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA
          1 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA

                *                                    
       1343 AAACATTTGAAATTCAAACATTTGAACTCTTGTTCTTATCC
          1 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCC

       1384 CTTTGAATTT


Statistics
Matches: 82,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  42   82  1.00

ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38


Consensus pattern (42 bp):   
AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA
Done.