Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold307
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 546686
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.31
Warning! 20572 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:290749 original size:18 final size:17
Alignment explanation
Indices: 290678--290751 Score: 55
Period size: 18 Copynumber: 4.4 Consensus size: 17
290668 TTACAAAACT
290678 TAAAATCAAA-ATAAAAA
1 TAAAAT-AAAGATAAAAA
*
290695 -CAAA-AAAGATAAAAAA
1 TAAAATAAAGAT-AAAAA
* **
290711 TAAAATAAAAATAAACT
1 TAAAATAAAGATAAAAA
*
290728 TAAACATAAAGATAAAGA
1 TAAA-ATAAAGATAAAAA
290746 TAAAAT
1 TAAAAT
290752 TTATTTATTT
Statistics
Matches: 44, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
14 3 0.07
15 2 0.05
16 8 0.18
17 12 0.27
18 19 0.43
ACGTcount: A:0.73, C:0.05, G:0.04, T:0.18
Consensus pattern (17 bp):
TAAAATAAAGATAAAAA
Found at i:298100 original size:68 final size:68
Alignment explanation
Indices: 297894--298160 Score: 306
Period size: 68 Copynumber: 4.0 Consensus size: 68
297884 TATCCTGCAA
* * * * *
297894 ACTCCATATGTTGCCGTAGTCGAGTTATGGTCTTACACATTGA-AAGCCCATGTTCATTGTCCTG
1 ACTCCATATGTTGCCATAGTTGAGCTATGGTCTTACACATT-ATAACCCCATGTTTATTGTCCTG
*
297958 GTGC
65 GTGG
* * * * **
297962 ACTTCATATATTGCCATAGTTGAGCTATGGTCTTACACATTCT-ACCCCATGTTTAATGTCCCAG
1 ACTCCATATGTTGCCATAGTTGAGCTATGGTCTTACACATTATAACCCCATGTTTATTGTCCTGG
298026 TGG
66 TGG
* * * *
298029 ACTCTATATGTTGCCATAGCTGAGCTATGGTTTTACAAATTATAACCCCATGTTTATTGTCCTGG
1 ACTCCATATGTTGCCATAGTTGAGCTATGGTCTTACACATTATAACCCCATGTTTATTGTCCTGG
298094 TGG
66 TGG
** * * * *
298097 ACTCCATATGTTGTGATAGTTGAGCTATGTTCTTACATACTGTAACCCC-TGTTTATTGTCCTGG
1 ACTCCATATGTTGCCATAGTTGAGCTATGGTCTTACACATTATAACCCCATGTTTATTGTCCTGG
298161 CAGACTTTTG
Statistics
Matches: 166, Mismatches: 31, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
67 69 0.42
68 97 0.58
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (68 bp):
ACTCCATATGTTGCCATAGTTGAGCTATGGTCTTACACATTATAACCCCATGTTTATTGTCCTGG
TGG
Found at i:298150 original size:135 final size:135
Alignment explanation
Indices: 297894--298157 Score: 327
Period size: 135 Copynumber: 2.0 Consensus size: 135
297884 TATCCTGCAA
* * * *
297894 ACTCCATATGTTGCCGTAGTCGAGTTATGGTCTTACACATTGAAAGCCCATGTTCATTGTCCTGG
1 ACTCCATATGTTGCCATAGTCGAGCTATGGTCTTACAAATTGAAACCCCATGTTCATTGTCCTGG
* *
297959 TGCACTTCATATATTGCCATAGTTGAGCTATGGTCTTACACATTCTACCCCATGTTTAATGTCCC
66 TGCACTCCATATATTGCCATAGTTGAGCTATGGTCTTACACACTCTACCCCATGTTTAATGTCCC
298024 AGTGG
131 AGTGG
* * *
298029 ACTCTATATGTTGCCATAG-CTGAGCTATGGTTTTACAAATT-ATAACCCCATGTTTATTGTCCT
1 ACTCCATATGTTGCCATAGTC-GAGCTATGGTCTTACAAATTGA-AACCCCATGTTCATTGTCCT
* * ** * * * *
298092 GGTGGACTCCATATGTTGTGATAGTTGAGCTATGTTCTTACATACTGTAACCCC-TGTTTATTGT
64 GGTGCACTCCATATATTGCCATAGTTGAGCTATGGTCTTACACACTCT-ACCCCATGTTTAATGT
298156 CC
128 CC
298158 TGGCAGACTT
Statistics
Matches: 109, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
134 2 0.02
135 102 0.94
136 5 0.05
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (135 bp):
ACTCCATATGTTGCCATAGTCGAGCTATGGTCTTACAAATTGAAACCCCATGTTCATTGTCCTGG
TGCACTCCATATATTGCCATAGTTGAGCTATGGTCTTACACACTCTACCCCATGTTTAATGTCCC
AGTGG
Found at i:299156 original size:25 final size:25
Alignment explanation
Indices: 299122--299171 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
299112 TCAGGAGTGA
299122 GCCTTGCCACTATTATCTGTAACCT
1 GCCTTGCCACTATTATCTGTAACCT
299147 GCCTTGCCACTATTATCTGTAACCT
1 GCCTTGCCACTATTATCTGTAACCT
299172 ACTTACTTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.36
Consensus pattern (25 bp):
GCCTTGCCACTATTATCTGTAACCT
Found at i:304216 original size:29 final size:29
Alignment explanation
Indices: 304170--304230 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
304160 CCTAGGAAGA
*
304170 GTAAAAGAGCTTCAGCCCAATAAACTACG
1 GTAAAAGAGCTTCAGCCCAAGAAACTACG
* *
304199 GTAAGAGAGCTTCGGCCCAAGAAACTACG
1 GTAAAAGAGCTTCAGCCCAAGAAACTACG
304228 GTA
1 GTA
304231 GTTTCAGACC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (29 bp):
GTAAAAGAGCTTCAGCCCAAGAAACTACG
Found at i:307444 original size:21 final size:21
Alignment explanation
Indices: 307420--307460 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
307410 AACACCAAAA
307420 CTCATTCAAGAACATTAATGG
1 CTCATTCAAGAACATTAATGG
307441 CTCATTCAAGAACATTAATG
1 CTCATTCAAGAACATTAATG
307461 TGAAATCCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (21 bp):
CTCATTCAAGAACATTAATGG
Found at i:315778 original size:22 final size:23
Alignment explanation
Indices: 315740--315783 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
315730 AAAAGTAGAA
315740 AAAAACTCAGTCACTAG-TGTAC
1 AAAAACTCAGTCACTAGCTGTAC
*
315762 AAAAACTC-GTGAGCTAGCTGTA
1 AAAAACTCAGTCA-CTAGCTGTA
315784 GTTTCTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 3 0.16
22 12 0.63
23 4 0.21
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (23 bp):
AAAAACTCAGTCACTAGCTGTAC
Found at i:317396 original size:28 final size:28
Alignment explanation
Indices: 317352--317440 Score: 126
Period size: 28 Copynumber: 3.2 Consensus size: 28
317342 TGTATAGTAT
* *
317352 CAGT-ACAATGTAGGCCTTAGCCCATTA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
*
317379 CAGTAACATTGTGGGCCTTAGCCCAATA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
*
317407 CAGTAACAATGTGAGCCTTAGCCCAATA
1 CAGTAACAATGTGGGCCTTAGCCCAATA
*
317435 CGGTAA
1 CAGTAA
317441 TCAGTACAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
27 4 0.07
28 51 0.93
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (28 bp):
CAGTAACAATGTGGGCCTTAGCCCAATA
Found at i:319973 original size:2 final size:2
Alignment explanation
Indices: 319966--320018 Score: 63
Period size: 2 Copynumber: 26.0 Consensus size: 2
319956 ATACATTCGA
* *
319966 AT AT AT AT AT AT AT AT AT A- AT GAGT AC AT GT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT -A-T AT AT AT AT AT AT AT AT AT
320009 AT AT AT AT AT
1 AT AT AT AT AT
320019 CAAATGCATA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
1 1 0.02
2 40 0.91
3 2 0.05
4 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (2 bp):
AT
Found at i:329346 original size:2 final size:2
Alignment explanation
Indices: 329339--329391 Score: 63
Period size: 2 Copynumber: 26.0 Consensus size: 2
329329 ATACATTCGA
* *
329339 AT AT AT AT AT AT AT AT AT A- AT GAGT AC AT GT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT -A-T AT AT AT AT AT AT AT AT AT
329382 AT AT AT AT AT
1 AT AT AT AT AT
329392 CAAATGCATA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
1 1 0.02
2 40 0.91
3 2 0.05
4 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (2 bp):
AT
Found at i:332004 original size:27 final size:27
Alignment explanation
Indices: 331974--332092 Score: 134
Period size: 27 Copynumber: 4.4 Consensus size: 27
331964 GGGTATAACA
331974 GTCATTTTAGCCAATAGGG-GTATTTCG
1 GTCATTTTA-CCAATAGGGAGTATTTCG
** *
332001 GTCATTTTACCCTTTGGGAGTATTTCG
1 GTCATTTTACCAATAGGGAGTATTTCG
* *
332028 GTCATTTTACCCTATAGAG-GTATTTCG
1 GTCATTTTA-CCAATAGGGAGTATTTCG
* * *
332055 GTCATTTTACCATTTGGGAGTCTTTCG
1 GTCATTTTACCAATAGGGAGTATTTCG
332082 GTCATTTTACC
1 GTCATTTTACC
332093 CTTCGAGGGT
Statistics
Matches: 77, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
26 11 0.14
27 61 0.79
28 5 0.06
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCAATAGGGAGTATTTCG
Found at i:332107 original size:27 final size:27
Alignment explanation
Indices: 331991--332360 Score: 395
Period size: 27 Copynumber: 13.7 Consensus size: 27
331981 TAGCCAATAG
* *
331991 GGGTATTTCGGTCATTTTACCCTTTG-
1 GGGTATTTCGGTAATTTTACCCTTCGA
* *
332017 GGAGTATTTCGGTCATTTTACCCTATAGA
1 GG-GTATTTCGGTAATTTTACCCT-TCGA
* * *
332046 -GGTATTTCGGTCATTTTACCATTTG-
1 GGGTATTTCGGTAATTTTACCCTTCGA
* *
332071 GGAGTCTTTCGGTCATTTTACCCTTCGA
1 GG-GTATTTCGGTAATTTTACCCTTCGA
** *
332099 GGGTATTTCAATAATTTTACCCTTTGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
332126 GGGTATTTCGGTAATTTTACCCCTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* ** * *
332153 CGGTATTTTAGTAATTTTACTCTTCAA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* * **
332180 GCGTATTTCGATAATTTTATGCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* *
332207 GGGTATTTTGGTAATTTTACCATTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
332234 GGGTATTTCGATAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
332261 GGGTATTTCAGTAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* **
332288 TGGTATTTTAGTAATTTTACCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
* * *
332315 GAGTATTTCGATAATTTTAGCCTTCGA
1 GGGTATTTCGGTAATTTTACCCTTCGA
*
332342 GGGTATTTCGGTAAATTTA
1 GGGTATTTCGGTAATTTTA
332361 TCCGAGAAGT
Statistics
Matches: 287, Mismatches: 51, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
26 5 0.02
27 277 0.97
28 5 0.02
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.43
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACCCTTCGA
Found at i:337430 original size:28 final size:28
Alignment explanation
Indices: 337386--337474 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
337376 TGTACAGTAT
* *
337386 TAGT-ACAGTGTGAGCCTTACCCCATTA
1 TAGTAACAATGTGAGCCTTACCCCAATA
* *
337413 TAGTAACAATGTGGGCCTTAGCCCAATA
1 TAGTAACAATGTGAGCCTTACCCCAATA
* *
337441 CAGTAACAATGTAAGCCTT-CGCCCAATA
1 TAGTAACAATGTGAGCCTTAC-CCCAATA
*
337469 AAGTAA
1 TAGTAA
337475 TTAGTACAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 4 0.08
28 47 0.92
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (28 bp):
TAGTAACAATGTGAGCCTTACCCCAATA
Found at i:337629 original size:26 final size:26
Alignment explanation
Indices: 337586--337645 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
337576 ACCAATATCA
* *
337586 TAGCAAAGTTACATATAATAATAAGG
1 TAGCAAAGTTACATATAACAATAACG
* *
337612 TAGCAAAGTTGCCA-ATAACATTAACG
1 TAGCAAAGTT-ACATATAACAATAACG
337638 TAGCAAAG
1 TAGCAAAG
337646 CTACCAGTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.23
Consensus pattern (26 bp):
TAGCAAAGTTACATATAACAATAACG
Found at i:337884 original size:27 final size:26
Alignment explanation
Indices: 337854--338252 Score: 229
Period size: 27 Copynumber: 14.8 Consensus size: 26
337844 TATAACGGTT
*
337854 ATTTTACCCTATAGGGGTATTTTAGTC
1 ATTTTACCCT-TAGGGGTATTTCAGTC
* *
337881 ATTTTACCTTTTAGGGGTATTTCAGTT
1 ATTTTACC-CTTAGGGGTATTTCAGTC
* *
337908 AGTTTACCCTTCTA-GGTTATTTCAGTC
1 ATTTTACCC-T-TAGGGGTATTTCAGTC
* *
337935 ATTTTACACTTCGAGGGTATTTC-GATC
1 ATTTTACCCTTAG-GGGTATTTCAG-TC
* *
337962 ATTTTACCCTTCAAGGGTATTTCAGTA
1 ATTTTACCCTT-AGGGGTATTTCAGTC
*
337989 ATTTTACCCTTAGAGGGTATTTCAGTA
1 ATTTTACCCTTAG-GGGTATTTCAGTC
* * *
338016 ATTTTACACTTTGAGGGTATTTCGGT-
1 ATTTTACCCTTAG-GGGTATTTCAGTC
* * * *
338042 A-ATTACCCTTCGAGGGTATTTCGGTA
1 ATTTTACCCTTAG-GGGTATTTCAGTC
*
338068 ATTTTACCCTTCGAGGGTATTTCAG-C
1 ATTTTACCCTTAG-GGGTATTTCAGTC
* * * *
338094 AATTTTACCCTTTGATGGTATTTTAGTA
1 -ATTTTACCCTTAG-GGGTATTTCAGTC
* * * *
338122 AGTTTACCCTTCGAGGATATTTC-GATA
1 ATTTTACCCTTAG-GGGTATTTCAG-TC
*
338149 ATTTTACCCTTCGAGGGTATTTCAG-C
1 ATTTTACCCTTAG-GGGTATTTCAGTC
* * * *
338175 AATTTTACCCTTTGATGGTATTTTAGTA
1 -ATTTTACCCTTAG-GGGTATTTCAGTC
* * * *
338203 AGTTTACCCTTCGAGGATATTTC-GATA
1 ATTTTACCCTTAG-GGGTATTTCAG-TC
*
338230 ATTTTACCCTTCGAGGGTATTTC
1 ATTTTACCCTTAG-GGGTATTTC
338253 GATAATTTTA
Statistics
Matches: 306, Mismatches: 48, Indels: 36
0.78 0.12 0.09
Matches are distributed among these distances:
25 22 0.07
26 7 0.02
27 272 0.89
28 5 0.02
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (26 bp):
ATTTTACCCTTAGGGGTATTTCAGTC
Found at i:338253 original size:27 final size:28
Alignment explanation
Indices: 337895--338262 Score: 417
Period size: 27 Copynumber: 13.7 Consensus size: 28
337885 TACCTTTTAG
* * *
337895 GGGTATTTC-AGTTAGTTTACCCTTCTA
1 GGGTATTTCGAGTAATTTTACCCTTCGA
* * *
337922 GGTTATTTC-AGTCATTTTACACTTCGA
1 GGGTATTTCGAGTAATTTTACCCTTCGA
* *
337949 GGGTATTTCGA-TCATTTTACCCTTCAA
1 GGGTATTTCGAGTAATTTTACCCTTCGA
*
337976 GGGTATTTC-AGTAATTTTACCCTTAGA
1 GGGTATTTCGAGTAATTTTACCCTTCGA
* *
338003 GGGTATTTC-AGTAATTTTACACTTTGA
1 GGGTATTTCGAGTAATTTTACCCTTCGA
338030 GGGTATTTCG-GTAA--TTACCCTTCGA
1 GGGTATTTCGAGTAATTTTACCCTTCGA
338055 GGGTATTTCG-GTAATTTTACCCTTCGA
1 GGGTATTTCGAGTAATTTTACCCTTCGA
* *
338082 GGGTATTTC-AGCAATTTTACCCTTTGA
1 GGGTATTTCGAGTAATTTTACCCTTCGA
* * *
338109 TGGTATTT-TAGTAAGTTTACCCTTCGA
1 GGGTATTTCGAGTAATTTTACCCTTCGA
*
338136 GGATATTTCGA-TAATTTTACCCTTCGA
1 GGGTATTTCGAGTAATTTTACCCTTCGA
* *
338163 GGGTATTTC-AGCAATTTTACCCTTTGA
1 GGGTATTTCGAGTAATTTTACCCTTCGA
* * *
338190 TGGTATTT-TAGTAAGTTTACCCTTCGA
1 GGGTATTTCGAGTAATTTTACCCTTCGA
*
338217 GGATATTTCGA-TAATTTTACCCTTCGA
1 GGGTATTTCGAGTAATTTTACCCTTCGA
338244 GGGTATTTCGA-TAATTTTA
1 GGGTATTTCGAGTAATTTTA
338263 GGCCCATTAC
Statistics
Matches: 293, Mismatches: 37, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
25 23 0.08
26 2 0.01
27 265 0.90
28 3 0.01
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (28 bp):
GGGTATTTCGAGTAATTTTACCCTTCGA
Found at i:338262 original size:81 final size:81
Alignment explanation
Indices: 337910--338252 Score: 462
Period size: 81 Copynumber: 4.3 Consensus size: 81
337900 TTTCAGTTAG
* * * * * * * *
337910 TTTACCCTTCTAGGTTATTTCAGTC-ATTTTACACTTCGAGGGTA-TTTCGATCATTTTACCCTT
1 TTTACCCTTCGAGGGTATTTCAG-CAATTTTACCCTTTGATGGTATTTTAG-TAAGTTTACCCTT
* *
337973 CAAGGGTATTTC-AGTAAT
64 CGAGGATATTTCGA-TAAT
* * * * **
337991 TTTACCCTTAGAGGGTATTTCAGTAATTTTACACTTTGAGGGTATTTCGGTAA--TTACCCTTCG
1 TTTACCCTTCGAGGGTATTTCAGCAATTTTACCCTTTGATGGTATTTTAGTAAGTTTACCCTTCG
* *
338054 AGGGTATTTCGGTAAT
66 AGGATATTTCGATAAT
338070 TTTACCCTTCGAGGGTATTTCAGCAATTTTACCCTTTGATGGTATTTTAGTAAGTTTACCCTTCG
1 TTTACCCTTCGAGGGTATTTCAGCAATTTTACCCTTTGATGGTATTTTAGTAAGTTTACCCTTCG
338135 AGGATATTTCGATAAT
66 AGGATATTTCGATAAT
338151 TTTACCCTTCGAGGGTATTTCAGCAATTTTACCCTTTGATGGTATTTTAGTAAGTTTACCCTTCG
1 TTTACCCTTCGAGGGTATTTCAGCAATTTTACCCTTTGATGGTATTTTAGTAAGTTTACCCTTCG
338216 AGGATATTTCGATAAT
66 AGGATATTTCGATAAT
338232 TTTACCCTTCGAGGGTATTTC
1 TTTACCCTTCGAGGGTATTTC
338253 GATAATTTTA
Statistics
Matches: 239, Mismatches: 18, Indels: 10
0.90 0.07 0.04
Matches are distributed among these distances:
79 70 0.29
81 166 0.69
82 3 0.01
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (81 bp):
TTTACCCTTCGAGGGTATTTCAGCAATTTTACCCTTTGATGGTATTTTAGTAAGTTTACCCTTCG
AGGATATTTCGATAAT
Found at i:342305 original size:23 final size:23
Alignment explanation
Indices: 342264--342308 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
342254 TGCATTTTAG
* **
342264 TATCAAAATTAGTTTGGTAACAA
1 TATCAAAATCAGTACGGTAACAA
342287 TATCAAAATCAGTACGGTAACA
1 TATCAAAATCAGTACGGTAACA
342309 TTCTTGGCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.29
Consensus pattern (23 bp):
TATCAAAATCAGTACGGTAACAA
Found at i:342849 original size:14 final size:14
Alignment explanation
Indices: 342830--342856 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
342820 ATAGGTTCGG
342830 GAATCTCATGAATT
1 GAATCTCATGAATT
342844 GAATCTCATGAAT
1 GAATCTCATGAAT
342857 CTATATACTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (14 bp):
GAATCTCATGAATT
Found at i:345090 original size:17 final size:16
Alignment explanation
Indices: 345070--345130 Score: 51
Period size: 17 Copynumber: 3.9 Consensus size: 16
345060 GAAGCAGAGG
345070 AATAAAATAAAGAAATT
1 AATAAAATAAAGAAA-T
345087 AATAAAATTAATA-AAAT
1 AATAAAA-TAA-AGAAAT
*
345104 ACT-AAAT-AA-AAA-
1 AATAAAATAAAGAAAT
345116 AATAAAATAAAGAAA
1 AATAAAATAAAGAAA
345131 GGCAAACAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
12 2 0.05
13 8 0.22
14 3 0.08
15 4 0.11
16 3 0.08
17 10 0.27
18 6 0.16
19 1 0.03
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.21
Consensus pattern (16 bp):
AATAAAATAAAGAAAT
Found at i:351309 original size:23 final size:27
Alignment explanation
Indices: 351251--351309 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 27
351241 GAGCCATGAT
351251 CGGTAAGCT-TATTACGAGCTGAAGAA
1 CGGTAAGCTCTATTACGAGCTGAAGAA
*
351277 CAGTAAGCTCTA-T-CGAGCTG-A-AA
1 CGGTAAGCTCTATTACGAGCTGAAGAA
351300 CGGTAAGCTC
1 CGGTAAGCTC
351310 ATAAGAGCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 11 0.37
24 1 0.03
25 7 0.23
26 9 0.30
27 2 0.07
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.22
Consensus pattern (27 bp):
CGGTAAGCTCTATTACGAGCTGAAGAA
Found at i:351317 original size:23 final size:24
Alignment explanation
Indices: 351251--351345 Score: 77
Period size: 26 Copynumber: 3.8 Consensus size: 24
351241 GAGCCATGAT
*
351251 CGGTAAGCTTATTACGAGCTGAAGAA
1 CGGTAAGCTCA-TACGAGCTG-AGAA
*
351277 CAGTAAGCTC-TATCGAGCTGA-AA
1 CGGTAAGCTCATA-CGAGCTGAGAA
* *
351300 CGGTAAGCTCATAAGAGCTGATATA
1 CGGTAAGCTCATACGAGCTGAGA-A
* *
351325 GCGGTCAGTTCATACGAGCTG
1 -CGGTAAGCTCATACGAGCTG
351346 TGGTGAGTCT
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
23 18 0.32
24 6 0.11
25 8 0.14
26 25 0.44
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (24 bp):
CGGTAAGCTCATACGAGCTGAGAA
Found at i:369830 original size:359 final size:359
Alignment explanation
Indices: 369171--369888 Score: 1436
Period size: 359 Copynumber: 2.0 Consensus size: 359
369161 ATCCAAAAAC
369171 GCATTAAGAATGAGATTAAAATATGTTACTTTTATAGCTTATCAATTGGTGCACTCAGACTGCAC
1 GCATTAAGAATGAGATTAAAATATGTTACTTTTATAGCTTATCAATTGGTGCACTCAGACTGCAC
369236 CTATTTGATATCTGTTCTCATTGATTGCATCTCTCCCTCAATTCTATCCAATTGTTGACTACATC
66 CTATTTGATATCTGTTCTCATTGATTGCATCTCTCCCTCAATTCTATCCAATTGTTGACTACATC
369301 CAGTATGGTCATTTGGGTTGACTCTATCCTAGGGTTTTTGCAAATAAGGAGGTTGGTAATTAGTG
131 CAGTATGGTCATTTGGGTTGACTCTATCCTAGGGTTTTTGCAAATAAGGAGGTTGGTAATTAGTG
369366 TTTTTAACTTGATTTAGATTATTACCTACTCATTGGTTTCCCCCATCCTAGATTCGGGTGATCTC
196 TTTTTAACTTGATTTAGATTATTACCTACTCATTGGTTTCCCCCATCCTAGATTCGGGTGATCTC
369431 TTCAGCTGGGATTATATGTATTCGAATAGTGGTTTCCACCCCTATTCTTGACGTAATATACATCC
261 TTCAGCTGGGATTATATGTATTCGAATAGTGGTTTCCACCCCTATTCTTGACGTAATATACATCC
369496 TCAGTCAGATTGTTGATATAGTGGAAAAGAGGTT
326 TCAGTCAGATTGTTGATATAGTGGAAAAGAGGTT
369530 GCATTAAGAATGAGATTAAAATATGTTACTTTTATAGCTTATCAATTGGTGCACTCAGACTGCAC
1 GCATTAAGAATGAGATTAAAATATGTTACTTTTATAGCTTATCAATTGGTGCACTCAGACTGCAC
369595 CTATTTGATATCTGTTCTCATTGATTGCATCTCTCCCTCAATTCTATCCAATTGTTGACTACATC
66 CTATTTGATATCTGTTCTCATTGATTGCATCTCTCCCTCAATTCTATCCAATTGTTGACTACATC
369660 CAGTATGGTCATTTGGGTTGACTCTATCCTAGGGTTTTTGCAAATAAGGAGGTTGGTAATTAGTG
131 CAGTATGGTCATTTGGGTTGACTCTATCCTAGGGTTTTTGCAAATAAGGAGGTTGGTAATTAGTG
369725 TTTTTAACTTGATTTAGATTATTACCTACTCATTGGTTTCCCCCATCCTAGATTCGGGTGATCTC
196 TTTTTAACTTGATTTAGATTATTACCTACTCATTGGTTTCCCCCATCCTAGATTCGGGTGATCTC
369790 TTCAGCTGGGATTATATGTATTCGAATAGTGGTTTCCACCCCTATTCTTGACGTAATATACATCC
261 TTCAGCTGGGATTATATGTATTCGAATAGTGGTTTCCACCCCTATTCTTGACGTAATATACATCC
369855 TCAGTCAGATTGTTGATATAGTGGAAAAGAGGTT
326 TCAGTCAGATTGTTGATATAGTGGAAAAGAGGTT
369889 TGTCTCCTCC
Statistics
Matches: 359, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
359 359 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (359 bp):
GCATTAAGAATGAGATTAAAATATGTTACTTTTATAGCTTATCAATTGGTGCACTCAGACTGCAC
CTATTTGATATCTGTTCTCATTGATTGCATCTCTCCCTCAATTCTATCCAATTGTTGACTACATC
CAGTATGGTCATTTGGGTTGACTCTATCCTAGGGTTTTTGCAAATAAGGAGGTTGGTAATTAGTG
TTTTTAACTTGATTTAGATTATTACCTACTCATTGGTTTCCCCCATCCTAGATTCGGGTGATCTC
TTCAGCTGGGATTATATGTATTCGAATAGTGGTTTCCACCCCTATTCTTGACGTAATATACATCC
TCAGTCAGATTGTTGATATAGTGGAAAAGAGGTT
Found at i:388387 original size:7 final size:7
Alignment explanation
Indices: 388371--388405 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
388361 GTATTTGAGG
388371 TTTT-TT
1 TTTTATT
388377 TTTTATT
1 TTTTATT
388384 TTTTATT
1 TTTTATT
388391 TTTTATT
1 TTTTATT
388398 TTTATATT
1 TTT-TATT
388406 AAACCGATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 4 0.15
7 19 0.70
8 4 0.15
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTATT
Found at i:389108 original size:27 final size:28
Alignment explanation
Indices: 389071--389125 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
389061 TCAAAAGTCA
*
389071 CACTTTAATTA-CAACATAATT-AATTTT
1 CACTTAAATTATCAACAT-ATTGAATTTT
*
389098 CACTTAAATTATTAACATATTGAATTTT
1 CACTTAAATTATCAACATATTGAATTTT
389126 AATTATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.40, C:0.13, G:0.02, T:0.45
Consensus pattern (28 bp):
CACTTAAATTATCAACATATTGAATTTT
Found at i:390764 original size:20 final size:20
Alignment explanation
Indices: 390727--390784 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
390717 CCACACGACC
*
390727 GTGTGCCTCATTTTACACAAGT
1 GTGTGCCTC--TTCACACAAGT
* *
390749 GTGTGCTTCTTCACACAGGT
1 GTGTGCCTCTTCACACAAGT
390769 GTGTGCCTCTTC-CACA
1 GTGTGCCTCTTCACACA
390785 TGGGCGTGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 4 0.12
20 20 0.62
22 8 0.25
ACGTcount: A:0.17, C:0.28, G:0.21, T:0.34
Consensus pattern (20 bp):
GTGTGCCTCTTCACACAAGT
Found at i:394934 original size:21 final size:22
Alignment explanation
Indices: 394891--394934 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
394881 CAAAAGTAGA
** *
394891 AAAAACTCATTCATTAGTGCAT
1 AAAAACTCATGAATTAGTCCAT
394913 AAAAACTCATGAATTAG-CCAT
1 AAAAACTCATGAATTAGTCCAT
394934 A
1 A
394935 TGTGGAGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.27
Consensus pattern (22 bp):
AAAAACTCATGAATTAGTCCAT
Found at i:395052 original size:18 final size:18
Alignment explanation
Indices: 395029--395063 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
395019 ACGATGTGTC
395029 AAACTATTTTAATGCTTG
1 AAACTATTTTAATGCTTG
*
395047 AAACTATTTTGATGCTT
1 AAACTATTTTAATGCTT
395064 CCTGTTCTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.46
Consensus pattern (18 bp):
AAACTATTTTAATGCTTG
Found at i:395877 original size:206 final size:207
Alignment explanation
Indices: 395512--395924 Score: 819
Period size: 206 Copynumber: 2.0 Consensus size: 207
395502 CTAGTTTTCA
395512 CACTAAAGGAGTTTGAATACAAGTACTTTTATTATATTTTAGTTATGTTTTTATATTTTAGTTTA
1 CACTAAAGGAGTTTGAATACAAGTACTTTTATTATATTTTAGTTATGTTTTTATATTTTAGTTTA
395577 AATCAAATAAAAAAGTGTATTTGACTTTTTTATTGACCTTATGGGTCGTATGAGGCCTAGAGGCA
66 AATCAAATAAAAAAGTGTATTTGACTTTTTTATTGACCTTATGGGTCGTATGAGGCCTAGAGGCA
395642 AGCTAACATACTTAGTGAATGTGTAGGAGACCATGCAAGGGCATAATAACCCAATACTAGTTGCT
131 AGCTAACATACTTAGTGAATGTGTAGGAGACCATGCAAGGGCATAATAACCCAATACTAGTTGCT
395707 GTGTTGCAACGC
196 GTGTTGCAACGC
395719 CACTAAAGGA-TTTGAATACAAGTACTTTTATTATATTTTAGTTATGTTTTTATATTTTAGTTTA
1 CACTAAAGGAGTTTGAATACAAGTACTTTTATTATATTTTAGTTATGTTTTTATATTTTAGTTTA
395783 AATCAAATAAAAAAGTGTATTTGACTTTTTTATTGACCTTATGGGTCGTATGAGGCCTAGAGGCA
66 AATCAAATAAAAAAGTGTATTTGACTTTTTTATTGACCTTATGGGTCGTATGAGGCCTAGAGGCA
395848 AGCTAACATACTTAGTGAATGTGTAGGAGACCATGCAAGGGCATAATAACCCAATACTAGTTGCT
131 AGCTAACATACTTAGTGAATGTGTAGGAGACCATGCAAGGGCATAATAACCCAATACTAGTTGCT
395913 GTGTTGCAACGC
196 GTGTTGCAACGC
395925 GGGGAGTTTG
Statistics
Matches: 206, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
206 196 0.95
207 10 0.05
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (207 bp):
CACTAAAGGAGTTTGAATACAAGTACTTTTATTATATTTTAGTTATGTTTTTATATTTTAGTTTA
AATCAAATAAAAAAGTGTATTTGACTTTTTTATTGACCTTATGGGTCGTATGAGGCCTAGAGGCA
AGCTAACATACTTAGTGAATGTGTAGGAGACCATGCAAGGGCATAATAACCCAATACTAGTTGCT
GTGTTGCAACGC
Found at i:430812 original size:27 final size:27
Alignment explanation
Indices: 430773--430865 Score: 134
Period size: 27 Copynumber: 3.5 Consensus size: 27
430763 ATACCCTCGA
** *
430773 AGGGT-AAATGACCGTAACACCTCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
430799 AGGGTAAAATGACCGTAATGCCCCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* *
430826 ATGGTAAAATGATCGTAATGCCCCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
430853 AGGGTAAAATGAC
1 AGGGTAAAATGAC
430866 TATTTTACTC
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
26 5 0.08
27 54 0.92
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (27 bp):
AGGGTAAAATGACCGTAATGCCCCTGT
Found at i:430914 original size:24 final size:24
Alignment explanation
Indices: 430884--430978 Score: 84
Period size: 24 Copynumber: 4.0 Consensus size: 24
430874 TCCTCGGGGT
*
430884 TAAATGATTGATTTGCCTGTGATC
1 TAAATGATTGATTTGCCTGTGATA
** * *
430908 TAAATGAAGGATTTGTCC-GAGATG
1 TAAATGATTGATTTG-CCTGTGATA
* **
430932 TAAATGACTGATTTGTTTGTGATA
1 TAAATGATTGATTTGCCTGTGATA
* *
430956 TAAATGGTTGATTTGTCTGTGAT
1 TAAATGATTGATTTGCCTGTGAT
430979 TCGTATGACT
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
24 54 0.96
25 2 0.04
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.41
Consensus pattern (24 bp):
TAAATGATTGATTTGCCTGTGATA
Found at i:431105 original size:27 final size:27
Alignment explanation
Indices: 431061--431118 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
431051 GGAAGTACTA
431061 TACTGGTAGCTCTGCCACA-ATCACAGT
1 TACTGGTAGCTCTGCCACATAT-ACAGT
*
431088 TACTGGTGGCT-TGACCACATATACAGT
1 TACTGGTAGCTCTG-CCACATATACAGT
431115 TACT
1 TACT
431119 AGCAGCTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 2 0.07
27 24 0.86
28 2 0.07
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (27 bp):
TACTGGTAGCTCTGCCACATATACAGT
Found at i:431186 original size:32 final size:32
Alignment explanation
Indices: 431141--431326 Score: 223
Period size: 32 Copynumber: 5.8 Consensus size: 32
431131 ACGATGTTAT
*
431141 TGATGGCTTTGTGCCGATCATATTACCATTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
*
431173 TGATGG-TTGTGTGCCGATCATATTACCATTAC
1 TGATGGCTT-TGTGCCGATCATATTACTATTAC
* * *
431205 TGATGGATGTGTGCCGATCATATTACTACTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
*
431237 TGATGGCTTTGTGCCGATCATACTACTATTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* * * ** *
431269 TAATAGCTGTGTGTTGAT-ATATTACTACTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* *
431300 TGATGGCTTTGTCCCAATCATATTACT
1 TGATGGCTTTGTGCCGATCATATTACT
431327 GTACTTATGG
Statistics
Matches: 130, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
31 24 0.18
32 105 0.81
33 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATATTACTATTAC
Found at i:431356 original size:22 final size:21
Alignment explanation
Indices: 431331--431404 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 21
431321 ATTACTGTAC
431331 TTATGGCCTGTAGCCATTCTGT
1 TTATGGCCT-TAGCCATTCTGT
* * * *
431353 TTATAGCTTATAGCTATCCTGT
1 TTATGGCCT-TAGCCATTCTGT
* *
431375 TTACGGCTCTTAGCCATTCTGG
1 TTATGGC-CTTAGCCATTCTGT
431397 TTACTGGC
1 TTA-TGGC
431405 AGCTTTGCTG
Statistics
Matches: 38, Mismatches: 12, Indels: 3
0.72 0.23 0.06
Matches are distributed among these distances:
22 34 0.89
23 4 0.11
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.41
Consensus pattern (21 bp):
TTATGGCCTTAGCCATTCTGT
Found at i:440308 original size:28 final size:28
Alignment explanation
Indices: 440272--440326 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
440262 TTGCCACCAT
*
440272 TTCTTTATTGGGCTAAGGCCCACACTGA
1 TTCTGTATTGGGCTAAGGCCCACACTGA
*
440300 TTCTGTATTGGGCTAAGGCCCATACTG
1 TTCTGTATTGGGCTAAGGCCCACACTG
440327 TACTGTTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (28 bp):
TTCTGTATTGGGCTAAGGCCCACACTGA
Found at i:442469 original size:23 final size:23
Alignment explanation
Indices: 442437--442512 Score: 107
Period size: 23 Copynumber: 3.3 Consensus size: 23
442427 ATAAGTGCCA
*
442437 CACTGATATGTAGTCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
442460 CCCTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
442483 CACTGAAATGTAGCCGAAGCTAG
1 CACTGATATGTAGCCGAAGCTAC
442506 CACTGAT
1 CACTGAT
442513 CAATAACACT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:449912 original size:23 final size:23
Alignment explanation
Indices: 449844--449914 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 23
449834 ATAAGTGCCA
*
449844 CACTGATATGTAGCCGAAGCTAA
1 CACTGATATGTAGCCGAAGCTAC
*
449867 CACTGATATGTAG-CAATAGCTAC
1 CACTGATATGTAGCCGA-AGCTAC
* *
449890 CACTGAAATGTTGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
449913 CA
1 CA
449915 TTGCTCAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 2 0.05
23 37 0.90
24 2 0.05
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:456557 original size:26 final size:28
Alignment explanation
Indices: 456507--456562 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
456497 AAAGGTTGTT
456507 AAATGACCGTAATACCCCAGTAA-GGTA
1 AAATGACCGTAATACCCCAGTAAGGGTA
* * *
456534 AAATGATCGTAATGCCCCTG-AAGGGTA
1 AAATGACCGTAATACCCCAGTAAGGGTA
456561 AA
1 AA
456563 TAACTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.08
27 23 0.92
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (28 bp):
AAATGACCGTAATACCCCAGTAAGGGTA
Found at i:457035 original size:33 final size:33
Alignment explanation
Indices: 456993--457122 Score: 147
Period size: 33 Copynumber: 3.9 Consensus size: 33
456983 CATTTGATAC
*
456993 GGGCTAAGGCCCACACTATACTGCTATTGTTTT
1 GGGCTAAGGCCCACACTATACTGTTATTGTTTT
* **
457026 GGGCTAAGGCCCACACTATACTGTTACTGTTAA
1 GGGCTAAGGCCCACACTATACTGTTATTGTTTT
* * *
457059 GGGCTCAGGCCCA-A-TTTCCACCGTTATTGTTTT
1 GGGCTAAGGCCCACACTAT--ACTGTTATTGTTTT
* *
457092 GGGCTAAGGCCCACACTATATTGTTACTGTT
1 GGGCTAAGGCCCACACTATACTGTTATTGTT
457123 AAGGGCTCAG
Statistics
Matches: 78, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
31 2 0.03
32 1 0.01
33 72 0.92
34 1 0.01
35 2 0.03
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (33 bp):
GGGCTAAGGCCCACACTATACTGTTATTGTTTT
Found at i:458486 original size:16 final size:16
Alignment explanation
Indices: 458473--458504 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
458463 TATTTAGGAC
458473 TTTTTATTTTTAGGTA
1 TTTTTATTTTTAGGTA
458489 TTTTTATTTTTAGGTA
1 TTTTTATTTTTAGGTA
458505 ACATTTGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (16 bp):
TTTTTATTTTTAGGTA
Found at i:472594 original size:27 final size:27
Alignment explanation
Indices: 472555--472705 Score: 144
Period size: 27 Copynumber: 5.6 Consensus size: 27
472545 ATTCGTGGGC
* * *
472555 AAATTATCAAAATACCCTCGGAGGGTA
1 AAATTACCGAAATACCCTCGAAGGGTA
*
472582 AAATTACCGAAATACCGTCGAAGGGTA
1 AAATTACCGAAATACCCTCGAAGGGTA
* * * *
472609 AAATTATCAAAATACCGTTGAAGGGTA
1 AAATTACCGAAATACCCTCGAAGGGTA
*
472636 AAATTACTGAAATACCCTCGAAGGGTA
1 AAATTACCGAAATACCCTCGAAGGGTA
* * * *
472663 AAAGTACTGAAACACCC-CTGAAGGG-G
1 AAATTACCGAAATACCCTC-GAAGGGTA
* *
472689 AAATGACTGAAATACCC
1 AAATTACCGAAATACCC
472706 CCATGGGGTA
Statistics
Matches: 105, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
26 15 0.14
27 90 0.86
ACGTcount: A:0.42, C:0.19, G:0.20, T:0.20
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGAAGGGTA
Found at i:472619 original size:54 final size:54
Alignment explanation
Indices: 472555--472665 Score: 177
Period size: 54 Copynumber: 2.1 Consensus size: 54
472545 ATTCGTGGGC
* *
472555 AAATTATCAAAATACCCTCGGAGGGTAAAATTACCGAAATACCGTCGAAGGGTA
1 AAATTATCAAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTA
* * *
472609 AAATTATCAAAATACCGTTGAAGGGTAAAATTACTGAAATACCCTCGAAGGGTA
1 AAATTATCAAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTA
472663 AAA
1 AAA
472666 GTACTGAAAC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.22
Consensus pattern (54 bp):
AAATTATCAAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTA
Found at i:472707 original size:27 final size:27
Alignment explanation
Indices: 472627--472723 Score: 78
Period size: 27 Copynumber: 3.6 Consensus size: 27
472617 AAAATACCGT
* *
472627 TGAAGGGTAAAATTACTGAAATACCCTC
1 TGAAGGG-AAAATGACTGAAATACCCCC
*
472655 -GAAGGGTAAAA-GTACTGAAACA-CCCC
1 TGAAGGG-AAAATG-ACTGAAATACCCCC
*
472681 TGAAGGGGAAATGACTGAAATACCCCC
1 TGAAGGGAAAATGACTGAAATACCCCC
472708 ATG--GGGTAAAATGACT
1 -TGAAGGG-AAAATGACT
472724 ACTATGCCCC
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
26 17 0.30
27 38 0.67
28 2 0.04
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.19
Consensus pattern (27 bp):
TGAAGGGAAAATGACTGAAATACCCCC
Found at i:472943 original size:26 final size:27
Alignment explanation
Indices: 472914--473020 Score: 78
Period size: 26 Copynumber: 4.1 Consensus size: 27
472904 TTTGCCACAA
*
472914 ATACT-ATTACTGGTAGCTTTGCTGCG
1 ATACTAATTACTGGCAGCTTTGCTGCG
* * * **
472940 ATACTGA-TACTGGCAGCTCTGTTTTG
1 ATACTAATTACTGGCAGCTTTGCTGCG
* * * *
472966 TTACT-GTTACTGGCAGCTTTGTTGTG
1 ATACTAATTACTGGCAGCTTTGCTGCG
* *
472992 TTACTAATT-TTGGCAGCTTTGCTGCG
1 ATACTAATTACTGGCAGCTTTGCTGCG
473018 ATA
1 ATA
473021 TTGGTGTGTT
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
26 61 0.95
27 3 0.05
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.41
Consensus pattern (27 bp):
ATACTAATTACTGGCAGCTTTGCTGCG
Found at i:473168 original size:28 final size:29
Alignment explanation
Indices: 473124--473247 Score: 94
Period size: 30 Copynumber: 4.2 Consensus size: 29
473114 CTGCATTTGT
* *
473124 ACTGATTACTGTTTTGGGCTGAGGCCCAC
1 ACTGATTACTGTATTGGGCTAAGGCCCAC
473153 ACTGA-TACTGTATTGGGCTAAGGCCCAC
1 ACTGATTACTGTATTGGGCTAAGGCCCAC
* * *
473181 ATTCTG-TTATTGTATTAGGCTATGGCTCGCAC
1 A--CTGATTACTGTATTGGGCTAAGGC-C-CAC
* * * *
473213 ACT--TCTACTGTATAGGGCTCAGGCTCAG
1 ACTGAT-TACTGTATTGGGCTAAGGCCCAC
473241 ACTGATT
1 ACTGATT
473248 CTGCATGTTG
Statistics
Matches: 75, Mismatches: 12, Indels: 16
0.73 0.12 0.16
Matches are distributed among these distances:
28 27 0.36
29 7 0.09
30 36 0.48
31 1 0.01
32 4 0.05
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (29 bp):
ACTGATTACTGTATTGGGCTAAGGCCCAC
Found at i:479603 original size:27 final size:27
Alignment explanation
Indices: 479564--479783 Score: 205
Period size: 27 Copynumber: 8.2 Consensus size: 27
479554 GATTCATGGG
* *
479564 AAAATTACCGAAATACCCTTGAAGGGT
1 AAAATTACTGAAATACCCTCGAAGGGT
* * * *
479591 AAAATTAGTGAAATATCGTCAAAGGGT
1 AAAATTACTGAAATACCCTCGAAGGGT
* *
479618 AAAATTACCGAAATACCCTTGAAGGGT
1 AAAATTACTGAAATACCCTCGAAGGGT
* *
479645 AAAATTA-TCGAAATACTCTCGAAGAGT
1 AAAATTACT-GAAATACCCTCGAAGGGT
* *
479672 AAAATTATTGAAATACCCTTG-AGGGT
1 AAAATTACTGAAATACCCTCGAAGGGT
* * *
479698 TAAATTACTAAAATTCCCTCGAAGGGT
1 AAAATTACTGAAATACCCTCGAAGGGT
* *
479725 AAAATTACCT-AAATACCCCCGAAGGGG
1 AAAATTA-CTGAAATACCCTCGAAGGGT
* * *
479752 AAAATGACCGAAATACCC-CCATAGGGT
1 AAAATTACTGAAATACCCTCGA-AGGGT
479779 AAAAT
1 AAAAT
479784 GATCGTTATG
Statistics
Matches: 155, Mismatches: 32, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
26 23 0.15
27 129 0.83
28 3 0.02
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTCGAAGGGT
Found at i:479748 original size:80 final size:81
Alignment explanation
Indices: 479564--479783 Score: 226
Period size: 80 Copynumber: 2.7 Consensus size: 81
479554 GATTCATGGG
* * * * *
479564 AAAATTACCGAAATACCCTTGAAGGGTAAAATTAGTGAAATATCGTCAAAGGGTAAAATTACCGA
1 AAAATTACCGAAATACCCTCGAAGAGTAAAATTAGTGAAATACCCTCAAAGGGTAAAATTACCAA
*
479629 AATACCCTTGAAGGGT
66 AATACCCTCGAAGGGT
* * * ** * *
479645 AAAATTATCGAAATACTCTCGAAGAGTAAAATTATTGAAATACCCT-TGAGGGTTAAATTACTAA
1 AAAATTACCGAAATACCCTCGAAGAGTAAAATTAGTGAAATACCCTCAAAGGGTAAAATTACCAA
*
479709 AATTCCCTCGAAGGGT
66 AATACCCTCGAAGGGT
* * * * * ** * *
479725 AAAATTACCTAAATACCCCCGAAGGGGAAAATGACCGAAATACCCCCATAGGGTAAAAT
1 AAAATTACCGAAATACCCTCGAAGAGTAAAATTAGTGAAATACCCTCAAAGGGTAAAAT
479784 GATCGTTATG
Statistics
Matches: 111, Mismatches: 27, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
80 63 0.57
81 48 0.43
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (81 bp):
AAAATTACCGAAATACCCTCGAAGAGTAAAATTAGTGAAATACCCTCAAAGGGTAAAATTACCAA
AATACCCTCGAAGGGT
Found at i:479756 original size:107 final size:108
Alignment explanation
Indices: 479564--479767 Score: 268
Period size: 107 Copynumber: 1.9 Consensus size: 108
479554 GATTCATGGG
* * *
479564 AAAATTACCGAAATACCCTTGAAGGGTAAAATTAGTGAAATATCGTCAAAGGGTAAAATTACCGA
1 AAAATTACCGAAATACCCTTGAAGGGTAAAATTACTAAAATATCCTCAAAGGGTAAAATTACCGA
** * * *
479629 AATACCCTTGAAGGGTAAAATTATCGAAATACTCTCGAAGAGT
66 AATACCCCCGAAGGGGAAAATGACCGAAATACTCTCGAAGAGT
** * * *
479672 AAAATTATTGAAATACCCTTG-AGGGTTAAATTACTAAAAT-TCCCTCGAAGGGTAAAATTACCT
1 AAAATTACCGAAATACCCTTGAAGGGTAAAATTACTAAAATAT-CCTCAAAGGGTAAAATTACCG
479735 AAATACCCCCGAAGGGGAAAATGACCGAAATAC
65 AAATACCCCCGAAGGGGAAAATGACCGAAATAC
479768 CCCCATAGGG
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
106 1 0.01
107 62 0.76
108 19 0.23
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.24
Consensus pattern (108 bp):
AAAATTACCGAAATACCCTTGAAGGGTAAAATTACTAAAATATCCTCAAAGGGTAAAATTACCGA
AATACCCCCGAAGGGGAAAATGACCGAAATACTCTCGAAGAGT
Found at i:480204 original size:28 final size:28
Alignment explanation
Indices: 480173--480248 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 28
480163 GATTACTGTT
480173 TTGGGATAAGGCCCACACTGATACTATA
1 TTGGGATAAGGCCCACACTGATACTATA
* *
480201 TT-GGACTTAGGCCCACACTCTGTTACTATA
1 TTGGGA-TAAGGCCCACA--CTGATACTATA
* *
480231 TTGGGCTATGGCCCACAC
1 TTGGGATAAGGCCCACAC
480249 ACTGCTACTG
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
27 3 0.08
28 13 0.33
30 21 0.54
31 2 0.05
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (28 bp):
TTGGGATAAGGCCCACACTGATACTATA
Found at i:480230 original size:30 final size:28
Alignment explanation
Indices: 480181--480257 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 28
480171 TTTTGGGATA
480181 AGGCCCACA-CTGATACTATATTGGACTT
1 AGGCCCACACCTGATACTATATTGGAC-T
* *
480209 AGGCCCACACTCTGTTACTATATTGGGCT
1 AGGCCCACAC-CTGATACTATATTGGACT
*
480238 ATGGCCCACACACTGCTACT
1 A-GGCCCACAC-CTGATACT
480258 GTATAAGGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 9 0.21
29 2 0.05
30 31 0.74
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (28 bp):
AGGCCCACACCTGATACTATATTGGACT
Found at i:480274 original size:30 final size:29
Alignment explanation
Indices: 480186--480275 Score: 74
Period size: 30 Copynumber: 3.0 Consensus size: 29
480176 GGATAAGGCC
* *
480186 CACACTGATACTATAT-TGGACTTAGGCCCA
1 CACACTGCTACTATATAAGG-C-TAGGCCCA
* * **
480216 CACTCTGTTACTATATTGGGCTATGGCCCA
1 CACACTGCTACTATATAAGGCTA-GGCCCA
*
480246 CACACTGCTACTGTATAAGGCTCAGGCCCA
1 CACACTGCTACTATATAAGGCT-AGGCCCA
480276 GACTAATTTT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
29 2 0.04
30 44 0.90
31 3 0.06
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (29 bp):
CACACTGCTACTATATAAGGCTAGGCCCA
Found at i:487287 original size:100 final size:101
Alignment explanation
Indices: 487109--487304 Score: 324
Period size: 100 Copynumber: 2.0 Consensus size: 101
487099 AAATAAATAA
*
487109 TAATAATTTTTAACAACTAAGGTCTTAAGCCACCAATTACTTAGTCTCCTAGATTCCTATCTCTA
1 TAATAATTTTTAACAACTAAGGTCTTAAGACACCAATTACTTAGTCTCCTAGATTCCTATCTCTA
487174 GTCTAACTATTTGTTTACAATTGCCCTCTTAGTTGT
66 GTCTAACTATTTGTTTACAATTGCCCTCTTAGTTGT
*
487210 TAAT-ATTTTTAACAACTAAGGTCTTAAGACACCAATTACTTAGTCT-CTCATATTCCTATCTCT
1 TAATAATTTTTAACAACTAAGGTCTTAAGACACCAATTACTTAGTCTCCT-AGATTCCTATCTCT
* * *
487273 AGTCTAACTGTTTGTTTATAATTTCCCTCTTA
65 AGTCTAACTATTTGTTTACAATTGCCCTCTTA
487305 CAACCCTTAA
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
99 2 0.02
100 83 0.93
101 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (101 bp):
TAATAATTTTTAACAACTAAGGTCTTAAGACACCAATTACTTAGTCTCCTAGATTCCTATCTCTA
GTCTAACTATTTGTTTACAATTGCCCTCTTAGTTGT
Found at i:493696 original size:12 final size:12
Alignment explanation
Indices: 493668--493698 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
493658 CACGGGCACA
*
493668 GACAAGGGCTAG
1 GACACGGGCTAG
493680 GACACGGGCTAG
1 GACACGGGCTAG
493692 GACACGG
1 GACACGG
493699 TCGTGCCACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.23, G:0.42, T:0.06
Consensus pattern (12 bp):
GACACGGGCTAG
Found at i:497461 original size:22 final size:22
Alignment explanation
Indices: 497436--497520 Score: 82
Period size: 22 Copynumber: 3.9 Consensus size: 22
497426 TGCTCGAAAA
*
497436 TCCCATATAGGGCTCTCATACG
1 TCCCATAAAGGGCTCTCATACG
* ** * *
497458 TCCCATAAATGATTCTTATACC
1 TCCCATAAAGGGCTCTCATACG
* *
497480 T-TCATAAAGGGCTCTCATATG
1 TCCCATAAAGGGCTCTCATACG
*
497501 TCCTATAAAGGGCTCTCATA
1 TCCCATAAAGGGCTCTCATA
497521 TACTGGTGCG
Statistics
Matches: 47, Mismatches: 15, Indels: 2
0.73 0.23 0.03
Matches are distributed among these distances:
21 14 0.30
22 33 0.70
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (22 bp):
TCCCATAAAGGGCTCTCATACG
Found at i:500219 original size:24 final size:24
Alignment explanation
Indices: 500192--500241 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
500182 GATTAAAAGT
500192 AAAACAACTGTGATAAAAGCATAG
1 AAAACAACTGTGATAAAAGCATAG
*
500216 AAAACAAGTGTGATAAAAGCATAG
1 AAAACAACTGTGATAAAAGCATAG
500240 AA
1 AA
500242 TGGTTAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.18, T:0.16
Consensus pattern (24 bp):
AAAACAACTGTGATAAAAGCATAG
Found at i:501779 original size:24 final size:24
Alignment explanation
Indices: 501753--501872 Score: 136
Period size: 25 Copynumber: 4.9 Consensus size: 24
501743 ACCAATTCTT
*
501753 AGCTCGT-ATGAGCTTACCGATTTT
1 AGCTCGTGA-GAGCTTACCGATTTC
*
501777 AGCTTGTGAGAGCTTACCGATTCTC
1 AGCTCGTGAGAGCTTACCGATT-TC
*
501802 AGCTTGT-ATGAGCTTACCGATTTC
1 AGCTCGTGA-GAGCTTACCGATTTC
*
501826 AGCTCATGAGAGCTTACCGATTTAC
1 AGCTCGTGAGAGCTTACCGATTT-C
* *
501851 AGCTCGTGAGAGCATATCGATT
1 AGCTCGTGAGAGCTTACCGATT
501873 CACAGCTTGT
Statistics
Matches: 84, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
24 41 0.49
25 43 0.51
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.33
Consensus pattern (24 bp):
AGCTCGTGAGAGCTTACCGATTTC
Found at i:501800 original size:49 final size:49
Alignment explanation
Indices: 501741--501857 Score: 164
Period size: 49 Copynumber: 2.4 Consensus size: 49
501731 TCATTAGGGA
* * * **
501741 TTACCAATTCTTAGCTCGTATGAGCTTACCGATTTTAGCTTGTGAGAGC
1 TTACCGATTCTCAGCTCGTATGAGCTTACCGATTTCAGCTCATGAGAGC
*
501790 TTACCGATTCTCAGCTTGTATGAGCTTACCGATTTCAGCTCATGAGAGC
1 TTACCGATTCTCAGCTCGTATGAGCTTACCGATTTCAGCTCATGAGAGC
501839 TTACCGATT-TACAGCTCGT
1 TTACCGATTCT-CAGCTCGT
501858 GAGAGCATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 1 0.02
49 59 0.98
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (49 bp):
TTACCGATTCTCAGCTCGTATGAGCTTACCGATTTCAGCTCATGAGAGC
Found at i:501814 original size:25 final size:23
Alignment explanation
Indices: 501753--501888 Score: 121
Period size: 25 Copynumber: 5.5 Consensus size: 23
501743 ACCAATTCTT
* *
501753 AGCTCGTATGAGCTTACCGATTTT
1 AGCTTGTA-GAGCTTACCGATTTC
501777 AGCTTGTGAGAGCTTACCGATTCTC
1 AGCTTGT-AGAGCTTACCGATT-TC
501802 AGCTTGTATGAGCTTACCGATTTC
1 AGCTTGTA-GAGCTTACCGATTTC
501826 AGCTCATG-AGAGCTTACCGATTTAC
1 AGCT--TGTAGAGCTTACCGATTT-C
* * * *
501851 AGCTCGTGAGAGCATATCGATTCAC
1 AGCTTGT-AGAGCTTACCGATT-TC
501876 AGCTTGTATGAGC
1 AGCTTGTA-GAGC
501889 ATACATGTAG
Statistics
Matches: 95, Mismatches: 7, Indels: 19
0.79 0.06 0.16
Matches are distributed among these distances:
23 1 0.01
24 41 0.43
25 51 0.54
26 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.32
Consensus pattern (23 bp):
AGCTTGTAGAGCTTACCGATTTC
Found at i:503013 original size:20 final size:20
Alignment explanation
Indices: 502980--503017 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
502970 GCCATATGGT
502980 TTGGCTTGTGTTATGGTAAC
1 TTGGCTTGTGTTATGGTAAC
503000 TTGG-TTGTGATTATGGTA
1 TTGGCTTGTG-TTATGGTA
503018 TTTTGAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.16, C:0.05, G:0.32, T:0.47
Consensus pattern (20 bp):
TTGGCTTGTGTTATGGTAAC
Found at i:509697 original size:267 final size:267
Alignment explanation
Indices: 509222--509759 Score: 968
Period size: 267 Copynumber: 2.0 Consensus size: 267
509212 CCTTAGTGGA
*
509222 ACTTGAAAAGTGTAGATTGTATATAGAATTTGTCCAAATAAATGGCCTACAAAATACGGGCAAAA
1 ACTTGAAAAGTGTAGATTGTATATAGAATTTGTCCAAATAAATGGCCTACAAAATACGAGCAAAA
*
509287 TATAAATAAGCCTGTACAAATGTTATTAGACCAGTCAATTCAGTTGGCTCCTAACCAGATCATAT
66 TATAAATAAGCCTGTACAAATGTTATTAGACCAGTCAATTCAGTTGGCTCCTAACCAGATCACAT
509352 TACAAAACTAATTTGGCACAGTGCTCAGACAAACTGGGTGTACTATACATTTGGCGGTAATTCAC
131 TACAAAACTAATTTGGCACAGTGCTCAGACAAACTGGGTGTACTATACATTTGGCGGTAATTCAC
* *
509417 ACCAGGCTTACTCTTTTGCTTGTCATGTTCTTTTCTTAAATAGCAGAATAACCCGAGATAAAATC
196 ACCAGGCTTACTCTTTTGCTTGTCATATTATTTTCTTAAATAGCAGAATAACCCGAGATAAAATC
509482 TTTAACT
261 TTTAACT
*
509489 ACTTGAAAATTGTAGATTGTATATAGAATTTGTCCAAATAAATGGCCTACAAAATACGAGCAAAA
1 ACTTGAAAAGTGTAGATTGTATATAGAATTTGTCCAAATAAATGGCCTACAAAATACGAGCAAAA
* *
509554 TATAAATAAGCCTGTACAAATGTTATTAGACTAGTCAATTCAGTTGGCTCCTAACCAGATCACGT
66 TATAAATAAGCCTGTACAAATGTTATTAGACCAGTCAATTCAGTTGGCTCCTAACCAGATCACAT
* *
509619 TACAAAACTAATTTGGCACATTGCTCAGACAAACTGGGTGTACTATACATTTGGTGGTAATTCAC
131 TACAAAACTAATTTGGCACAGTGCTCAGACAAACTGGGTGTACTATACATTTGGCGGTAATTCAC
* * *
509684 ACTAGGCTTACTCTTTTGCTTGTCATATTATTTTCTTAAATAGCAGAATAACCTGAGATAAAGTC
196 ACCAGGCTTACTCTTTTGCTTGTCATATTATTTTCTTAAATAGCAGAATAACCCGAGATAAAATC
509749 TTTAACT
261 TTTAACT
509756 ACTT
1 ACTT
509760 CTACAGTGAA
Statistics
Matches: 259, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
267 259 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Consensus pattern (267 bp):
ACTTGAAAAGTGTAGATTGTATATAGAATTTGTCCAAATAAATGGCCTACAAAATACGAGCAAAA
TATAAATAAGCCTGTACAAATGTTATTAGACCAGTCAATTCAGTTGGCTCCTAACCAGATCACAT
TACAAAACTAATTTGGCACAGTGCTCAGACAAACTGGGTGTACTATACATTTGGCGGTAATTCAC
ACCAGGCTTACTCTTTTGCTTGTCATATTATTTTCTTAAATAGCAGAATAACCCGAGATAAAATC
TTTAACT
Found at i:512109 original size:28 final size:28
Alignment explanation
Indices: 512069--512127 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
512059 TAAATAAAAT
512069 CATTTAGCACATTATTTACATGTTTATG
1 CATTTAGCACATTATTTACATGTTTATG
512097 CATTTAGCACATTATTTACATGTTTATG
1 CATTTAGCACATTATTTACATGTTTATG
512125 CAT
1 CAT
512128 CAATCTCACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.29, C:0.15, G:0.10, T:0.46
Consensus pattern (28 bp):
CATTTAGCACATTATTTACATGTTTATG
Found at i:516386 original size:40 final size:40
Alignment explanation
Indices: 516342--516419 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
516332 GAAAGAAAAA
516342 ACTCTAGATTGCATTCATTATTTGCTATTTAAAGGCAAAC
1 ACTCTAGATTGCATTCATTATTTGCTATTTAAAGGCAAAC
516382 ACTCTAGATTGCATTCATTATTTGCTATTTAAAGGCAA
1 ACTCTAGATTGCATTCATTATTTGCTATTTAAAGGCAA
516420 CTAGATGCCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (40 bp):
ACTCTAGATTGCATTCATTATTTGCTATTTAAAGGCAAAC
Found at i:516690 original size:22 final size:22
Alignment explanation
Indices: 516620--516690 Score: 56
Period size: 22 Copynumber: 3.1 Consensus size: 22
516610 AAATAACAGT
*
516620 TAATATTATTATTTTTAAGTAAAA
1 TAATA-TATTA-TTTTAATTAAAA
* * *
516644 -AATATATAATTTTTATCAAATA
1 TAATATATTATTTTAATTAAA-A
516666 TAA-ATATTATTTTAAATTAAAA
1 TAATATATTATTTT-AATTAAAA
516688 TAA
1 TAA
516691 CATCGATATA
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
21 8 0.22
22 18 0.49
23 11 0.30
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (22 bp):
TAATATATTATTTTAATTAAAA
Found at i:523812 original size:17 final size:17
Alignment explanation
Indices: 523792--523826 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
523782 GTTGTAATAG
523792 GACTAGGGTTAAGGTAT
1 GACTAGGGTTAAGGTAT
*
523809 GACTAGGGTTAAGTTAT
1 GACTAGGGTTAAGGTAT
523826 G
1 G
523827 GAAAGAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.34, T:0.31
Consensus pattern (17 bp):
GACTAGGGTTAAGGTAT
Found at i:525812 original size:3 final size:3
Alignment explanation
Indices: 525806--525887 Score: 114
Period size: 3 Copynumber: 27.3 Consensus size: 3
525796 TAAATGCAAC
*
525806 AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
525854 AAT AAT AAT AGT AA- AAGT AAT AA- AGAT AAT AAT A
1 AAT AAT AAT AAT AAT AA-T AAT AAT A-AT AAT AAT A
525888 CTATAGCAAT
Statistics
Matches: 71, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
2 3 0.04
3 65 0.92
4 3 0.04
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:525948 original size:24 final size:24
Alignment explanation
Indices: 525806--525959 Score: 96
Period size: 24 Copynumber: 6.2 Consensus size: 24
525796 TAAATGCAAC
* * *
525806 AATAATAATAGTAATAATAATAAT
1 AATAATAATACTACTAATAATAAA
* * *
525830 AATAATAATAATAATAATAATAAT
1 AATAATAATACTACTAATAATAAA
* *
525854 AATAATAATAGTA-AAAGTAATAAA
1 AATAATAATACTACTAA-TAATAAA
* * *
525878 GATAATAATACTA-TAGCAATGATGACATT
1 AATAATAATACTACT---AATAAT-A-A-A
* *
525907 AATAATAATACTATTAATAATATA
1 AATAATAATACTACTAATAATAAA
* *
525931 AATAATATTGCTACTAATAATAAA
1 AATAATAATACTACTAATAATAAA
525955 AATAA
1 AATAA
525960 CGATAAAATA
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
23 2 0.02
24 77 0.73
26 4 0.04
27 8 0.08
28 1 0.01
29 12 0.11
30 1 0.01
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (24 bp):
AATAATAATACTACTAATAATAAA
Found at i:526654 original size:11 final size:11
Alignment explanation
Indices: 526640--526686 Score: 60
Period size: 11 Copynumber: 4.3 Consensus size: 11
526630 TGTTATTTCG
526640 AAATAAAAATA
1 AAATAAAAATA
526651 AAATAAAAATA
1 AAATAAAAATA
*
526662 AAACAAAAATA
1 AAATAAAAATA
*
526673 TAAAT-GAAATA
1 -AAATAAAAATA
526684 AAA
1 AAA
526687 AAAGACCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
10 3 0.09
11 26 0.81
12 3 0.09
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:526687 original size:17 final size:17
Alignment explanation
Indices: 526640--526686 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
526630 TGTTATTTCG
526640 AAATAAAAATAAAATAA
1 AAATAAAAATAAAATAA
*
526657 AAATAAAACA-AAAATAT
1 AAATAAAA-ATAAAATAA
*
526674 AAAT-GAAATAAAA
1 AAATAAAAATAAAA
526687 AAAGACCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 1 0.04
16 6 0.23
17 18 0.69
18 1 0.04
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (17 bp):
AAATAAAAATAAAATAA
Found at i:527053 original size:27 final size:28
Alignment explanation
Indices: 527003--527059 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
526993 TAGTTTTGGG
*
527003 TTTGTTGGGTATTTGGGCTTGGTT-TAA
1 TTTGTTGGGTACTTGGGCTTGGTTGTAA
*
527030 TTTGTTGGGT-CTTGGGTTTGGGTTGTAA
1 TTTGTTGGGTACTTGGGCTT-GGTTGTAA
527058 TT
1 TT
527060 GGGTTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 7 0.27
27 14 0.54
28 5 0.19
ACGTcount: A:0.09, C:0.04, G:0.35, T:0.53
Consensus pattern (28 bp):
TTTGTTGGGTACTTGGGCTTGGTTGTAA
Found at i:527520 original size:46 final size:46
Alignment explanation
Indices: 527478--527770 Score: 379
Period size: 46 Copynumber: 6.4 Consensus size: 46
527468 ATAAGATTCA
* * *
527478 CCATATTCGATCTACTTCGCTGCCAAATACAGGAAGACAAGATCTG
1 CCATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTG
* * * *
527524 CTACCTTCGATCCCCTCCGTTGCCAAATACAGGAAGACAAGATCTG
1 CCATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTG
* *
527570 CTATCTTCGATCTCCTCCGCTGCCAATTACAGGAAGACAAGATCTG
1 CCATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTG
* * * ** * *
527616 CTATCCTCGATCTCCTCCGCTCCCAAATACATAAAGATAAGCTCTG
1 CCATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTG
* *
527662 CTATCTTCGATCTTCTCCGCTGCCAAATACAGGAAGACAAGATCTG
1 CCATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTG
* * *
527708 CTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGATAAGATCTG
1 CCATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTG
* *
527754 CTATCTTCGATCCCCTC
1 CCATCTTCGATCTCCTC
527771 GTACAGCCCA
Statistics
Matches: 219, Mismatches: 28, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 219 1.00
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (46 bp):
CCATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTG
Found at i:527626 original size:92 final size:92
Alignment explanation
Indices: 527483--527770 Score: 443
Period size: 92 Copynumber: 3.1 Consensus size: 92
527473 ATTCACCATA
* * *
527483 TTCGATCTACTTCGCTGCCAAATACAGGAAGACAAGATCTGCTA-CCTTCGATCCCCTCCGTTGC
1 TTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCC-TCGATCCCCTCCGCTGC
*
527547 CAAATACAGGAAGACAAGATCTGCTATC
65 CAAATACAGGAAGATAAGATCTGCTATC
* * *
527575 TTCGATCTCCTCCGCTGCCAATTACAGGAAGACAAGATCTGCTATCCTCGATCTCCTCCGCTCCC
1 TTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCCTCGATCCCCTCCGCTGCC
** *
527640 AAATACATAAAGATAAGCTCTGCTATC
66 AAATACAGGAAGATAAGATCTGCTATC
* *
527667 TTCGATCTTCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCC
1 TTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCCTCGATCCCCTCCGCTGCC
527732 AAATACAGGAAGATAAGATCTGCTATC
66 AAATACAGGAAGATAAGATCTGCTATC
*
527759 TTCGATCCCCTC
1 TTCGATCTCCTC
527771 GTACAGCCCA
Statistics
Matches: 175, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
92 173 0.99
93 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (92 bp):
TTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCCTCGATCCCCTCCGCTGCC
AAATACAGGAAGATAAGATCTGCTATC
Found at i:527711 original size:138 final size:138
Alignment explanation
Indices: 527484--527770 Score: 430
Period size: 138 Copynumber: 2.1 Consensus size: 138
527474 TTCACCATAT
* * * * *
527484 TCGATCTACTTCGCTGCCAAATACAGGAAGACAAGATCTGCTACCTTCGATCCCCTCCGTTGCCA
1 TCGATCTCCTCCGCTCCCAAATACAGAAAGACAAGATCTGCTACCTTCGATCCCCTCCGCTGCCA
* *
527549 AATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGCCAATTACAGGAAGACAAGATC
66 AATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATC
527614 TGCTATCC
131 TGCTATCC
* * * * **
527622 TCGATCTCCTCCGCTCCCAAATACATAAAGATAAGCTCTGCTATCTTCGATCTTCTCCGCTGCCA
1 TCGATCTCCTCCGCTCCCAAATACAGAAAGACAAGATCTGCTACCTTCGATCCCCTCCGCTGCCA
*
527687 AATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGATAAGATC
66 AATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATC
*
527752 TGCTATCT
131 TGCTATCC
*
527760 TCGATCCCCTC
1 TCGATCTCCTC
527771 GTACAGCCCA
Statistics
Matches: 133, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
138 133 1.00
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (138 bp):
TCGATCTCCTCCGCTCCCAAATACAGAAAGACAAGATCTGCTACCTTCGATCCCCTCCGCTGCCA
AATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATC
TGCTATCC
Found at i:527853 original size:26 final size:29
Alignment explanation
Indices: 527810--527866 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 29
527800 CATAAAACCC
527810 AATTACAACCCAAACCC-AAGACCCAACA
1 AATTACAACCCAAACCCAAAGACCCAACA
* *
527838 AATTA-AA-CCAAGCCCAAATACCCAACA
1 AATTACAACCCAAACCCAAAGACCCAACA
527865 AA
1 AA
527867 CCCAAAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 7 0.27
27 14 0.54
28 5 0.19
ACGTcount: A:0.53, C:0.35, G:0.04, T:0.09
Consensus pattern (29 bp):
AATTACAACCCAAACCCAAAGACCCAACA
Found at i:528210 original size:23 final size:23
Alignment explanation
Indices: 528183--528226 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
528173 AAAGGTCTTT
528183 TTTTA-TTTCATTTATATTTTTTG
1 TTTTATTTTCATTT-TATTTTTTG
*
528206 TTTTATTTTTATTTTATTTTT
1 TTTTATTTTCATTTTATTTTT
528227 ATTTTGAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (23 bp):
TTTTATTTTCATTTTATTTTTTG
Found at i:528214 original size:11 final size:11
Alignment explanation
Indices: 528200--528231 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
528190 TCATTTATAT
*
528200 TTTTTGTTTTA
1 TTTTTATTTTA
528211 TTTTTATTTTA
1 TTTTTATTTTA
528222 TTTTTATTTT
1 TTTTTATTTT
528232 GAAATAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.84
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:528215 original size:6 final size:6
Alignment explanation
Indices: 528182--528231 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
528172 AAAAGGTCTT
* *
528182 TTTTTA -TTTCA TTTATA TTTTT- TGTTTTA TTTTTA -TTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA T-TTTTA TTTTTA TTTTTA TTTTTA
528228 TTTT
1 TTTT
528232 GAAATAACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
5 10 0.28
6 25 0.69
7 1 0.03
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:528946 original size:3 final size:3
Alignment explanation
Indices: 528940--529038 Score: 62
Period size: 3 Copynumber: 33.3 Consensus size: 3
528930 TTAGCAGCAA
* * * * * *
528940 TAT TAT T-T ATAT TAT TAA TAG TAT TAT TAT TAT TAA TGT CAT CAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
** *
528985 TGC TA- TAG TAT TAT TAT CT-T TAT TACT T-T TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT
529029 TAT TAT TAT T
1 TAT TAT TAT T
529039 GTTGTTGTTG
Statistics
Matches: 76, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
2 6 0.08
3 66 0.87
4 4 0.05
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:529537 original size:3 final size:3
Alignment explanation
Indices: 529529--529571 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
529519 NNNNNNNNNN
529529 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
529572 TATTGTTGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:532246 original size:19 final size:18
Alignment explanation
Indices: 532205--532247 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
532195 CGTCTCTTTT
532205 TGCATTCATTTCATGCACC
1 TGCATTCATTTCATGCA-C
532224 TGCATTGCATTTCATTGCA-
1 TGCATT-CATTTCA-TGCAC
532243 TGCAT
1 TGCAT
532248 CAAATTGCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.50
20 7 0.32
21 4 0.18
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.40
Consensus pattern (18 bp):
TGCATTCATTTCATGCAC
Found at i:534307 original size:16 final size:16
Alignment explanation
Indices: 534279--534331 Score: 79
Period size: 16 Copynumber: 3.2 Consensus size: 16
534269 AGACTCAAAA
*
534279 AAAAATAAAAAAAATC
1 AAAAATCAAAAAAATC
534295 AAAAAAATCAAAAAAATC
1 --AAAAATCAAAAAAATC
534313 AAAAATCAAAAAAATC
1 AAAAATCAAAAAAATC
534329 AAA
1 AAA
534332 GTCAAAATAG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
16 19 0.56
18 15 0.44
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.11
Consensus pattern (16 bp):
AAAAATCAAAAAAATC
Found at i:534308 original size:25 final size:25
Alignment explanation
Indices: 534277--534331 Score: 83
Period size: 25 Copynumber: 2.1 Consensus size: 25
534267 TCAGACTCAA
534277 AAAAAAATAAAAAAAATCAAAAAAATC
1 AAAAAAAT--AAAAAATCAAAAAAATC
*
534304 AAAAAAATCAAAAATCAAAAAAATC
1 AAAAAAATAAAAAATCAAAAAAATC
534329 AAA
1 AAA
534332 GTCAAAATAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 19 0.70
27 8 0.30
ACGTcount: A:0.80, C:0.09, G:0.00, T:0.11
Consensus pattern (25 bp):
AAAAAAATAAAAAATCAAAAAAATC
Found at i:534325 original size:9 final size:9
Alignment explanation
Indices: 534277--534331 Score: 87
Period size: 9 Copynumber: 6.3 Consensus size: 9
534267 TCAGACTCAA
*
534277 AAAAAAATA
1 AAAAAAATC
534286 AAAAAAATC
1 AAAAAAATC
534295 AAAAAAATC
1 AAAAAAATC
534304 AAAAAAATC
1 AAAAAAATC
534313 --AAAAATC
1 AAAAAAATC
534320 AAAAAAATC
1 AAAAAAATC
534329 AAA
1 AAA
534332 GTCAAAATAG
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
7 7 0.16
9 36 0.84
ACGTcount: A:0.80, C:0.09, G:0.00, T:0.11
Consensus pattern (9 bp):
AAAAAAATC
Found at i:535165 original size:9 final size:9
Alignment explanation
Indices: 535146--535194 Score: 59
Period size: 10 Copynumber: 5.6 Consensus size: 9
535136 CTTCGAGTAA
535146 AAAAAAGATG
1 AAAAAA-ATG
535156 AAAAAAATG
1 AAAAAAATG
535165 -AAAAAATG
1 AAAAAAATG
535173 --AAAAATG
1 AAAAAAATG
535180 AAAAAAAATG
1 -AAAAAAATG
535190 AAAAA
1 AAAAA
535195 GTAAAAGTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.19
8 8 0.22
9 8 0.22
10 13 0.36
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (9 bp):
AAAAAAATG
Found at i:535173 original size:17 final size:18
Alignment explanation
Indices: 535145--535194 Score: 61
Period size: 17 Copynumber: 2.8 Consensus size: 18
535135 ACTTCGAGTA
535145 AAAAAAAGATGAAAAAAATG
1 AAAAAAA-ATG-AAAAAATG
535165 --AAAAAATG-AAAAATG
1 AAAAAAAATGAAAAAATG
535180 AAAAAAAATGAAAAA
1 AAAAAAAATGAAAAA
535195 GTAAAAGTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
15 7 0.26
17 11 0.41
18 9 0.33
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (18 bp):
AAAAAAAATGAAAAAATG
Found at i:535194 original size:8 final size:8
Alignment explanation
Indices: 535147--535185 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
535137 TTCGAGTAAA
535147 AAAAAGATG
1 AAAAA-ATG
535156 AAAAAAATG
1 -AAAAAATG
535165 AAAAAATG
1 AAAAAATG
535173 -AAAAATG
1 AAAAAATG
535180 AAAAAA
1 AAAAAA
535186 AATGAAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 7 0.25
8 13 0.46
9 3 0.11
10 5 0.18
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:536548 original size:88 final size:88
Alignment explanation
Indices: 536389--546447 Score: 11452
Period size: 88 Copynumber: 114.9 Consensus size: 88
536379 AATAGATCAG
* * *
536389 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGCTCGAAGACACAATCTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
536454 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
** * *
536477 TGAAGACATCAGATCTTGCCTTCCTACAGTGACAGCGAAGCAGGTCGAAGACACAAACCTAT-CC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCT-TGCC
* *
536541 TCTCTCGGGTGTGATGGAGCTGGG
65 TCTCTCGGTTGTGATGGAGCTGGT
* **
536565 TGAAGACAAAAGTTCTTGCCTTCCTATATTGACAGCGAAGCAGGTCGAAGA-ACCAAACCTAT-C
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACA-CAAACCT-TGC
536628 CTCTCTCGGTTGTGATGGAGCTGGT
64 CTCTCTCGGTTGTGATGGAGCTGGT
** * *
536653 TGAAGACATCAGATCTTGCCTTCCTACAGTGACAGCGAAGCAGGTCGAAGACACAAACCTAT-CC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCT-TGCC
* *
536717 TCTCTCGGGTGTGATGGAGCTGGG
65 TCTCTCGGTTGTGATGGAGCTGGT
* **
536741 TGAAGACAAAAGTTCTTGCCTTCCTATATTGACAGCGAAGCAGGTCGAAGA-ACCAAACCTAT-C
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACA-CAAACCT-TGC
536804 CTCTCTCGGTTGTGATGGAGCTGGT
64 CTCTCTCGGTTGTGATGGAGCTGGT
** * *
536829 TGAAGACATCAGATCTTGCCTTCCTACAGTGACAGCGAAGCAGGTCGAAGACACAAACCTAT-CC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCT-TGCC
536893 TCTCTCGGTTGTGATGGAGCTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* ** *
536917 TGAAGACAAAAGTTCTTGCCTTCCTATATTGACAGCGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
536982 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
537005 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537070 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * **
537093 TGAAGATTAAAA-ATCTTGCCTTCCTGTATTGACAGTGAATCAAATCGAAGACACAAACCTTGCC
1 TGAAGA-CAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCC
*
537157 TCCCTCGGTTGTGATGGAGCTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* *
537181 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537246 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
537269 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537334 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
537357 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537422 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
537445 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537510 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
537533 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537598 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
537621 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537686 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
537709 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537774 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
537797 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537862 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
537885 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537950 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
537973 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538038 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
538061 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538126 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
538149 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538214 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
538237 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538302 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
538325 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538390 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
538413 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538478 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
538501 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538566 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
538589 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538654 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
538677 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538742 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
538765 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538830 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
538853 TGAAGACAAAAGATCTTGCCTTCCTGCATTGGCAGCGAATCAGATCGAAGACAGAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538918 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * * * * *
538941 AGAAGTCAACAGATCTTGCCTTCCCGCATTGTCAGGGAAGCATGTC-ACAGACACAAAACTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGA-AGACACAAACCTTGCC
* * *
539005 TCCCTCAGTTGTGATGGAGTTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* * *
539029 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTC-AAGTACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG-ACACAAACCTTGCC
*
539093 TCTCTCGGTTGGGATGGAGCTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* * *
539117 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTC-AAGTACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG-ACACAAACCTTGCC
*
539181 TCTCTCGGTTGGGATGGAGCTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* * *
539205 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTC-AAGTACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG-ACACAAACCTTGCC
*
539269 TCTCTCGGTTGGGATGGAGCTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* * *
539293 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTC-AAGTACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG-ACACAAACCTTGCC
*
539357 TCTCTCGGTTGGGATGGAGCTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* * *
539381 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTC-AAGTACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG-ACACAAACCTTGCC
*
539445 TCTCTCGGTTGGGATGGAGCTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* * *
539469 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTC-AAGTACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG-ACACAAACCTTGCC
*
539533 TCTCTCGGTTGGGATGGAGCTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* * *
539557 TGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGGTCGAAGACATAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
539622 CTCTCGG-TGTGATGGAGCTGAT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
539644 TGAAAACAAAAGATCTTGCCTTCCCGCATTGACAGTGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
539709 CCCTCCGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *** *
539732 TGAAGGCAAAAAATCTTACCTTCCAGCATTGACAGCG-A--A---C-AA-AC-CTTGCC-TCCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
** * * ** * * *
539787 CGGTTGTGATG-GA-GCTGGTTGA
66 CTCTCG-GTTGTGATGGAGCTGGT
* * *** * * ** * * * * ***
539809 AGACA-ACAGATCTTGCCTT-CCTGCATTGACAGCGA-AGC-AGGTCAAAGAC-ACAAAC-CTTG
1 TGA-AGACAAAAGAT--CTTGCCTTC-CTG-CATTGACAGCGAAG-C-AGGTCGA-AGACACAAA
* * * *
539868 CC-T--CTCTCGGTATGG-AGCTGATTGAAGAC-AG-
58 CCTTGCCTCTC--T-CGGTTG-TGA-TGGAG-CTGGT
** *** * * * * * ** *
539899 T--AGATCTGACCTTCCTGCATTGACAGCGA-AG-CAG-GTCG-AAG------ACACAAACCTTG
1 TGAAGA-CAAAAGATCTTGCCTT-CCTGC-ATTGACAGCGAAGCAGGTCGAAGACACAAACCTTG
*
539952 CCTCTCTC-G--GT-ATGGAGCTGAT
63 CCTCTCTCGGTTGTGATGGAGCTGGT
* ** * * *
539974 TGAAGCCAGTAGATC-TGCCCTTCCTGCATTGACAGCGAGGCAGGTCAAAGACACAAGCCTTGCC
1 TGAAGACAAAAGATCTTG-CCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCC
*
540038 TCTCTC-G--GT-ATGGAGCTGAT
65 TCTCTCGGTTGTGATGGAGCTGGT
* ** * * *
540058 TGAAGCCAGTAGATC-TGCCCTTCCTGCATTGACAGCGAGGCAGGTCAAAGACACAAGCCTTGCC
1 TGAAGACAAAAGATCTTG-CCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCC
*
540122 TCTCTC-G--GT-ATGGAGCTGAT
65 TCTCTCGGTTGTGATGGAGCTGGT
* ** * * *
540142 TGAAGCCAGTAGATC-TGCCCTTCCTGCATTGACAGCGAGGCAGGTCAAAGACACAAGCCTTGCC
1 TGAAGACAAAAGATCTTG-CCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCC
*
540206 TCTCTCGGTTGCGATGGAGCTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* * *
540230 TGAAGACAACCA-ATCTTGCCTTCCTGCATTGATAGCGAAGCAGATCGAAGACACAAACCTTGCC
1 TGAAGACAA-AAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCC
*
540294 TCTCTCGGTTGTGATGGAGCGGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* * * *
540318 TGAAGACAAAAGATCCTGCCGTCCTGCATTGACAGCGAAGCAGGTCAAAGACACAAATCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
540383 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
540406 TGAAGACAACAGATCTTACCTTCCTGCATTGACAGCGAAGCTGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
540471 CTCTCGGTTGTGATGGAGCGGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * ** * *
540494 TGAAGACAAAAGATCCTGCCGTCCTGCATTGACAGCAAAGCATATCGAGGACACAAAACTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
540559 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * * *
540582 TGAAGACAACAGATCTTGCCTTCCTGCATTGTCAGGGAAGCATGTCAAAGACACTAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * **
540647 CCCTCAGTTGTGATGGATTTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
540670 TGAAGACAACAGATCTTGCCTTTCTACATTGACAGCGAAGCGGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
540735 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
** *
540758 TGAAGACAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCGTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * *
540823 CTCCCGGTTGTGATGGAGCCGAT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
540846 TGAAGACAACAGATCATGCCTTCCTGCATTGACTGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * *
540911 CCCTCGGTTGTGATAGAGGTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
540934 TGAGGACAACAGATCTTACCTTCCGGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
540999 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* ** * * *
541022 TGATGACAGCATATCTTGCCTTCTTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
541087 CCCTCGGTTATGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * * * *
541110 TGAATACAACAGATCTTTCCTTCCTACATTGACAGCGAACCGGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
541175 CTCTCGGTTGTGATGGAGCTAGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
541198 TGAAGACAAATGATCCTGCCTTCCTGCATTGGCAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
541263 CCCTCGGTTATGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * * **
541286 TGAATACAACAGATCTTTCCTTCCTGCATTGACAGTGAATCAAATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
541351 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
541374 TAAAGACAAAAGATCTCGCCTTCCTGCATTGACAGCGAAGCGGGTCAAAGACACAAACCTTACCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
541439 CTCTCAGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
541462 TAAAGACAAAAGGTCTTGCCTTCC-GTCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTG-CATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCC
* *
541526 TCCCTCGGCTGTGATGGA-CTTGGT
65 TCTCTCGGTTGTGATGGAGC-TGGT
* * * *
541550 TGAAGACAATAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAAACACAAACCTTACCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
541615 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
541638 TGAAGACAACAGATCTTCCCTTCCTGCAATGACAGTGAAGC-GTGTCGAAGACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAG-GTCGAAGACACAAACCTTGCC
*
541702 TCTCTCGGTTGTGATGGAGCTGAT
65 TCTCTCGGTTGTGATGGAGCTGGT
************************************************************
541726 TGAA-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
**********************
541790 NNNNNNNNNNNNNNNNNNNNNNT
66 CTCTCGGTTGTGATGGAGCTGGT
** * * * * * ** ***
541813 T---G-C----CTTCCTGCATTGACAGCGA-AG-CAGGTCGAAG-A-AAC-AA-AC-CTTGCCTC
1 TGAAGACAAAAGATCTTGCCTT-CCTGC-ATTGACA-G-CGAAGCAGGTCGAAGACACAAACCT-
** ** ** * ** * ** **
541863 TTTCGGT-TGTGATGGAACTGGTTGAAGAC
61 TGCCTCTCTCGGTTGTGA-TGG-AGCTGGT
** ****** * * * * *
541892 AAAAGATCTTGCCTTCCTGCATTGACAGCGA-AG-CAGGTCGAAG-A---C--AG----AAACCT
1 TGAAGA-CAAAAGATCTTGCCTT-CCTGC-ATTGACA-G-CGAAGCAGGTCGAAGACACAAACCT
* *
541945 TGCCTCCCTCGGTTGTGATGGCGCTGGT
61 TGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * * *
541973 TGAAGACAAAAGATCTTGCCTTCCTGCATTGGCAGCAAATCAGATCAAAGACAGAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
542038 CCCTCGGTTGTGATCGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * * * *
542061 AGAAGACAACAGATCTTGCCTTCCCGCATT-ATCAGGGAAGCATGTCAAAGACACAAACATTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGA-CAGCGAAGCAGGTCGAAGACACAAACCTTGCC
* * **
542125 TCCCTCAGTTGTGATGGATTTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* * *
542149 TGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGC-GAGTCGAAGACAGAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAG-GTCGAAGACACAAACCTTGCC
542213 TCTCTCGGTTGTGATGGAGCTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* * *
542237 TGAAGACAACAGATCTTGCCTTCCTGTATTGACAGCGACGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
542302 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * * * *
542325 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGAAGGAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
542390 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
542413 TGAATACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
542478 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
542501 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
542566 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
542589 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
542654 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
542677 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
542742 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
542765 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
542830 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
542853 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
542918 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
542941 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
543006 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
543029 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
543094 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
543117 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
543182 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
543205 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
543270 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
543293 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
543358 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
543381 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
543446 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
543469 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
543534 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
543557 TGAAGATAAAAAATCTTGCCTTCCTGCATTGACAGCGAATCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * *
543622 CCCTGGGTTTTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
543645 TGAAGACAACAGATCTTGCCTTCCTGCATTGTCACCGAAGCAGGTCAAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
543710 AC-CTCGATTATGATGGAGCTGGT
66 -CTCTCGGTTGTGATGGAGCTGGT
* * * * * * * *
543733 TGAAGACAACAGATCTTGCCTTCCTTCATTGTCAGGGAAGTATGTCAAAGACACTAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * **
543798 CCCTCAGTTATGATGGATTTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
543821 TGAAGACAACAGATCTTGCCTTCCTGTATTGACAGCGACGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
543886 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * * * *
543909 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGAAGGAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
543974 CTCTTGGTTGGGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
543997 TGAATACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
544062 CTCTCGGTGGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
544085 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
544150 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
544173 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
544238 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
544261 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
544326 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
544349 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
544414 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
544437 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
544502 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
544525 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
544590 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
544613 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
544678 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
544701 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
544766 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
544789 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
544854 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
544877 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
544942 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
544965 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
545030 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
545053 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
545118 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
545141 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
545206 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
545229 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
545294 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
545317 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
545382 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
545405 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
545470 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
545493 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
545558 CCCTCGATTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
545581 TGAAGATAAAAGATCTTGCCTTCCTGCATTGATAGCGAAGCAGATCGAAGACACAAACGTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
545646 CTCTCGGTTGTGGTGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
** * * ** * * * *
545669 TGAAGACAACCGATCTTACCATCCAACGTTGACAGCGAGGCAGGTCAAAGACACAAATCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
545734 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
** * * **
545757 TGAAGACAACCGATCTTGCCTTCCTACATTGACAGCGAATCAAATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * *
545822 CCCTCCGTTGTGAGGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
545845 TGAAGACAACAGATCTTGCCTTTCTGCATTGTCAGCGAAGCAGGTCAAAGACACAAACCTTGACT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * *
545910 CCCTCGGTTATAATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
545933 TGAATACAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCGGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
545998 CTCTCGGTTGTGATGGAGCTAGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
546021 TGAAGACAAATGATCCTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * *
546086 CCCGCGGTTGTGATGGAGCTAGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * **
546109 TGAAGACAAAAGATCTTACCTTCCTACATTGACAGTGAATCAAATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
546174 CCCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
546197 TAAAGACAACAGATCTTGCCTTCTTGCATTGACAGCGAAGCGGGTCAAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
546262 CTCTCAGTTGTGATGGAGCTCGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * * *
546285 TAAAGACAAAAGGTCTTGCCTTCCGGCATTAACAGCGAAGTAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
546350 CCCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
546373 TCAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
546438 CTGCT-GGTTG
66 CT-CTCGGTTG
546448 AAGACAACAG
Statistics
Matches: 8888, Mismatches: 970, Indels: 226
0.88 0.10 0.02
Matches are distributed among these distances:
73 1 0.00
74 5 0.00
75 8 0.00
76 11 0.00
77 15 0.00
78 22 0.00
79 22 0.00
80 18 0.00
81 8 0.00
82 13 0.00
83 9 0.00
84 193 0.02
85 3 0.00
86 6 0.00
87 107 0.01
88 8414 0.95
89 30 0.00
91 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (88 bp):
TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
CTCTCGGTTGTGATGGAGCTGGT
Found at i:536682 original size:176 final size:176
Alignment explanation
Indices: 536389--546686 Score: 12885
Period size: 176 Copynumber: 58.9 Consensus size: 176
536379 AATAGATCAG
* * *
536389 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGCTCGAAGACACAATCTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
** * *
536454 CCCTCGGTTGTGATGGAGCTGGTTGAAGACATCAGATCTTGCCTTCCTACAGTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
536519 GGTCGAAGACACAAACCTAT-CCTCTCTCGGGTGTGATGGAGCTGGG
131 GGTCGAAGACACAAACCT-TGCCTCTCTCGGTTGTGATGGAGCTGGT
* **
536565 TGAAGACAAAAGTTCTTGCCTTCCTATATTGACAGCGAAGCAGGTCGAAGA-ACCAAACCTAT-C
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACA-CAAACCT-TGC
* ** * *
536628 CTCTCTCGGTTGTGATGGAGCTGGTTGAAGACATCAGATCTTGCCTTCCTACAGTGACAGCGAAG
64 CTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAG
* *
536693 CAGGTCGAAGACACAAACCTAT-CCTCTCTCGGGTGTGATGGAGCTGGG
129 CAGGTCGAAGACACAAACCT-TGCCTCTCTCGGTTGTGATGGAGCTGGT
* **
536741 TGAAGACAAAAGTTCTTGCCTTCCTATATTGACAGCGAAGCAGGTCGAAGA-ACCAAACCTAT-C
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACA-CAAACCT-TGC
* ** * *
536804 CTCTCTCGGTTGTGATGGAGCTGGTTGAAGACATCAGATCTTGCCTTCCTACAGTGACAGCGAAG
64 CTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAG
536869 CAGGTCGAAGACACAAACCTAT-CCTCTCTCGGTTGTGATGGAGCTGGT
129 CAGGTCGAAGACACAAACCT-TGCCTCTCTCGGTTGTGATGGAGCTGGT
* ** *
536917 TGAAGACAAAAGTTCTTGCCTTCCTATATTGACAGCGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
536982 CTCTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
537047 GATCGAAGACACAAACCTTGCCTCCCTCGGTTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * **
537093 TGAAGATTAAAA-ATCTTGCCTTCCTGTATTGACAGTGAATCAAATCGAAGACACAAACCTTGCC
1 TGAAGA-CAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCC
*
537157 TCCCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGC
65 TCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGC
* *
537222 AGGTCGAAGAAACAAACCTTGCCTCTCTCGGTTGTGATAGAGCTGGT
130 AGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
537269 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537334 CCCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
537399 GGTCGAAGAAACAAACCTTGCCTCTCTCGGTTGTGATAGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
537445 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537510 CCCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
537575 GGTCGAAGAAACAAACCTTGCCTCTCTCGGTTGTGATAGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
537621 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537686 CCCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
537751 GGTCGAAGAAACAAACCTTGCCTCTCTCGGTTGTGATAGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
537797 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
537862 CCCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
537927 GGTCGAAGAAACAAACCTTGCCTCTCTCGGTTGTGATAGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
537973 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538038 CCCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
538103 GGTCGAAGAAACAAACCTTGCCTCTCTCGGTTGTGATAGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
538149 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538214 CCCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
538279 GGTCGAAGAAACAAACCTTGCCTCTCTCGGTTGTGATAGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
538325 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538390 CCCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
538455 GGTCGAAGAAACAAACCTTGCCTCTCTCGGTTGTGATAGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
538501 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538566 CCCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
538631 GGTCGAAGAAACAAACCTTGCCTCTCTCGGTTGTGATAGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
538677 TGAAGACAAAAGATCTTGCCTTCCTACATTGACAGCGACGGAGATCGAAGACACAAACTTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
538742 CCCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
538807 GGTCGAAGAAACAAACCTTGCCTCTCTCGGTTGTGATAGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * *
538853 TGAAGACAAAAGATCTTGCCTTCCTGCATTGGCAGCGAATCAGATCGAAGACAGAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * * *
538918 CCCTCGGTTGTGATGGAGCTGGTAGAAGTCAACAGATCTTGCCTTCCCGCATTGTCAGGGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * * * *
538983 TGTC-ACAGACACAAAACTTGCCTCCCTCAGTTGTGATGGAGTTGGT
131 GGTCGA-AGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * *
539029 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTC-AAGTACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG-ACACAAACCTTGCC
* * * *
539093 TCTCTCGGTTGGGATGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCAAAGC
65 TCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGC
* *
539158 AAGTC-AAGTACACAAACCTTGCCTCTCTCGGTTGGGATGGAGCTGGT
130 AGGTCGAAG-ACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * *
539205 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTC-AAGTACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG-ACACAAACCTTGCC
* * * *
539269 TCTCTCGGTTGGGATGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCAAAGC
65 TCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGC
* *
539334 AAGTC-AAGTACACAAACCTTGCCTCTCTCGGTTGGGATGGAGCTGGT
130 AGGTCGAAG-ACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * *
539381 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCAAAGCAAGTC-AAGTACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG-ACACAAACCTTGCC
* * * *
539445 TCTCTCGGTTGGGATGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCAAAGC
65 TCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGC
* *
539510 AAGTC-AAGTACACAAACCTTGCCTCTCTCGGTTGGGATGGAGCTGGT
130 AGGTCGAAG-ACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * *
539557 TGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCAGGTCGAAGACATAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
539622 CTCTCGG-TGTGATGGAGCTGATTGAAAACAAAAGATCTTGCCTTCCCGCATTGACAGTGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
539686 GGTCGAAGACACAAACCTTGCCTCCCTCCGTTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * *
539732 TGAAGGCAAAAAATCTTACCTTCCAGCATT------G-A-CA-G-C---GA-ACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
539783 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
539848 GGTCAAAGACACAAACCTTGCCTCTCTC-G--GT-ATGGAGCTGAT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
**
539890 TGAAGACAGTAGATC-TGACCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCC
1 TGAAGACAAAAGATCTTG-CCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCC
* * * ** *
539954 TCTCTC-G--GT-ATGGAGCTGATTGAAGCCAGTAGATC-TGCCCTTCCTGCATTGACAGCGAGG
65 TCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTG-CCTTCCTGCATTGACAGCGAAG
* * *
540014 CAGGTCAAAGACACAAGCCTTGCCTCTCTC-G--GT-ATGGAGCTGAT
129 CAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* ** * * *
540058 TGAAGCCAGTAGATC-TGCCCTTCCTGCATTGACAGCGAGGCAGGTCAAAGACACAAGCCTTGCC
1 TGAAGACAAAAGATCTTG-CCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCC
* * * ** *
540122 TCTCTC-G--GT-ATGGAGCTGATTGAAGCCAGTAGATC-TGCCCTTCCTGCATTGACAGCGAGG
65 TCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTG-CCTTCCTGCATTGACAGCGAAG
* * *
540182 CAGGTCAAAGACACAAGCCTTGCCTCTCTCGGTTGCGATGGAGCTGGT
129 CAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * *
540230 TGAAGACAACCA-ATCTTGCCTTCCTGCATTGATAGCGAAGCAGATCGAAGACACAAACCTTGCC
1 TGAAGACAA-AAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCC
* * * *
540294 TCTCTCGGTTGTGATGGAGCGGGTTGAAGACAAAAGATCCTGCCGTCCTGCATTGACAGCGAAGC
65 TCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGC
* *
540359 AGGTCAAAGACACAAATCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
130 AGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * *
540406 TGAAGACAACAGATCTTACCTTCCTGCATTGACAGCGAAGCTGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
540471 CTCTCGGTTGTGATGGAGCGGGTTGAAGACAAAAGATCCTGCCGTCCTGCATTGACAGCAAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
** * * *
540536 TATCGAGGACACAAAACTTGCCTCCCTCGGTTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * * *
540582 TGAAGACAACAGATCTTGCCTTCCTGCATTGTCAGGGAAGCATGTCAAAGACACTAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* ** * * * *
540647 CCCTCAGTTGTGATGGATTTGGTTGAAGACAACAGATCTTGCCTTTCTACATTGACAGCGAAGCG
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
*
540712 GGTCGAAGACACAAACCTTGCCTCCCTCGGTTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
** *
540758 TGAAGACAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCGTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
540823 CTCC-CGGTTGTGATGGAGCCGATTGAAGACAACAGATCATGCCTTCCTGCATTGACTGCGAAGC
66 C-CCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGC
* * * *
540887 AGATCGAAGACACAAACCTTGCCTCCCTCGGTTGTGATAGAGGTGGT
130 AGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * *
540934 TGAGGACAACAGATCTTACCTTCCGGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * ** * * *
540999 CTCTCGGTTGTGATGGAGCTGGTTGATGACAGCATATCTTGCCTTCTTGTATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
541064 GGTCGAAGACACAAACCTTGCCTCCCTCGGTTATGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * * * *
541110 TGAATACAACAGATCTTTCCTTCCTACATTGACAGCGAACCGGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
541175 CTCTCGGTTGTGATGGAGCTAGTTGAAGACAAATGATCCTGCCTTCCTGCATTGGCAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
541240 GATCGAAGACACAAACCTTGCCTCCCTCGGTTATGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * * **
541286 TGAATACAACAGATCTTTCCTTCCTGCATTGACAGTGAATCAAATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * *
541351 CTCTCGGTTGTGATGGAGCTGGTTAAAGACAAAAGATCTCGCCTTCCTGCATTGACAGCGAAGCG
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
541416 GGTCAAAGACACAAACCTTACCTCTCTCAGTTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * *
541462 TAAAGACAAAAGGTCTTGCCTTCC-GTCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTG-CATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCC
* * *
541526 TCCCTCGGCTGTGATGGA-CTTGGTTGAAGACAATAGATCTTGCCTTCCTGTATTGACAGCGAAG
65 TCCCTCGGTTGTGATGGAGC-TGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAG
* * *
541590 CAGGTCGAAAACACAAACCTTACCTCCCTCGGTTGTGATGGAGCTGGT
129 CAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * *
541638 TGAAGACAACAGATCTTCCCTTCCTGCAATGACAGTGAAGC-GTGTCGAAGACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAG-GTCGAAGACACAAACCTTGCC
* * ********************
541702 TCTCTCGGTTGTGATGGAGCTGATT---G-----A-A--------NNNNNNNNNNNNNNNNNNNN
65 TCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGC
***********************************************
541750 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
130 AGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
*************** *
541797 NNNNNNNNNNNNNNNTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
** *
541862 CTTTCGGTTGTGATGGAACTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
541927 GGTCGAAGACAGAAACCTTGCCTCCCTCGGTTGTGATGGCGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * * *
541973 TGAAGACAAAAGATCTTGCCTTCCTGCATTGGCAGCAAATCAGATCAAAGACAGAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
542038 CCCTCGGTTGTGATCGAGCTGGTAGAAGACAACAGATCTTGCCTTCCCGCATT-ATCAGGGAAGC
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGA-CAGCGAAGC
* * * * * **
542102 ATGTCAAAGACACAAACATTGCCTCCCTCAGTTGTGATGGATTTGGT
130 AGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * *
542149 TGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGC-GAGTCGAAGACAGAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAG-GTCGAAGACACAAACCTTGCC
* * * *
542213 TCTCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGTATTGACAGCGACGC
65 TCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGC
*
542278 AGGTCGAAGACACAAACCTTGCCTCCCTCGGTTGTGATGGAGCTGGT
130 AGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * * * *
542325 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGAAGGAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
542390 CTCTTGGTTGGGATGGAGCTGGTTGAATACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * * * *
542455 GGACAAATACACAAACCTTGCCTCTCTTGGTTGGGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
542501 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
542566 CTCTTGGTTGGGATGGAGCTGGTTGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * * * *
542631 GGACAAATACACAAACCTTGCCTCTCTTGGTTGGGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
542677 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
542742 CTCTTGGTTGGGATGGAGCTGGTTGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * * * *
542807 GGACAAATACACAAACCTTGCCTCTCTTGGTTGGGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
542853 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
542918 CTCTTGGTTGGGATGGAGCTGGTTGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * * * *
542983 GGACAAATACACAAACCTTGCCTCTCTTGGTTGGGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
543029 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
543094 CTCTTGGTTGGGATGGAGCTGGTTGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * * * *
543159 GGACAAATACACAAACCTTGCCTCTCTTGGTTGGGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
543205 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
543270 CTCTTGGTTGGGATGGAGCTGGTTGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * * * *
543335 GGACAAATACACAAACCTTGCCTCTCTTGGTTGGGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
543381 TGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
543446 CTCTTGGTTGGGATGGAGCTGGTTGAAGACAACAGATTTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
543511 GGTCGAAGACACAAACCTTGCCTCCCTCGATTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * *
543557 TGAAGATAAAAAATCTTGCCTTCCTGCATTGACAGCGAATCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
543622 CCCTGGGTTTTGATGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGTCACCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
543687 GGTCAAAGACACAAACCTTGCCTAC-CTCGATTATGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCT-CTCTCGGTTGTGATGGAGCTGGT
* * * * * * * *
543733 TGAAGACAACAGATCTTGCCTTCCTTCATTGTCAGGGAAGTATGTCAAAGACACTAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * ** * * *
543798 CCCTCAGTTATGATGGATTTGGTTGAAGACAACAGATCTTGCCTTCCTGTATTGACAGCGACGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
543863 GGTCGAAGACACAAACCTTGCCTCCCTCGATTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * * * *
543909 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGAAGGAGGACAAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
543974 CTCTTGGTTGGGATGGAGCTGGTTGAATACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
*
544039 GGTCGAAGACACAAACCTTGCCTCTCTCGGTGGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
544085 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
544150 CCCTCGATTGTGATGGAGCTGGTTGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
544215 CGTCGAAGACACAAACCTTGCCTCCCTCGATTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
544261 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
544326 CCCTCGATTGTGATGGAGCTGGTTGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
544391 CGTCGAAGACACAAACCTTGCCTCCCTCGATTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
544437 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
544502 CCCTCGATTGTGATGGAGCTGGTTGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
544567 CGTCGAAGACACAAACCTTGCCTCCCTCGATTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
544613 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
544678 CCCTCGATTGTGATGGAGCTGGTTGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
544743 CGTCGAAGACACAAACCTTGCCTCCCTCGATTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
544789 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
544854 CCCTCGATTGTGATGGAGCTGGTTGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
544919 CGTCGAAGACACAAACCTTGCCTCCCTCGATTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
544965 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
545030 CCCTCGATTGTGATGGAGCTGGTTGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
545095 CGTCGAAGACACAAACCTTGCCTCCCTCGATTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
545141 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
545206 CCCTCGATTGTGATGGAGCTGGTTGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
545271 CGTCGAAGACACAAACCTTGCCTCCCTCGATTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
545317 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
545382 CCCTCGATTGTGATGGAGCTGGTTGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
545447 CGTCGAAGACACAAACCTTGCCTCCCTCGATTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
545493 TGAAGATAAAAAATCTTGCCTTCCTGTATTGACAGCGACGCACGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * *
545558 CCCTCGATTGTGATGGAGCTGGTTGAAGATAAAAGATCTTGCCTTCCTGCATTGATAGCGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
545623 GATCGAAGACACAAACGTTGCCTCTCTCGGTTGTGGTGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
** * * ** * * * *
545669 TGAAGACAACCGATCTTACCATCCAACGTTGACAGCGAGGCAGGTCAAAGACACAAATCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* ** * *
545734 CTCTCGGTTGTGATGGAGCTGGTTGAAGACAACCGATCTTGCCTTCCTACATTGACAGCGAATCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
** * * *
545799 AATCGAAGACACAAACCTTGCCTCCCTCCGTTGTGAGGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
545845 TGAAGACAACAGATCTTGCCTTTCTGCATTGTCAGCGAAGCAGGTCAAAGACACAAACCTTGACT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * * *
545910 CCCTCGGTTATAATGGAGCTGGTTGAATACAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCG
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* *
545975 GGTCGAAGAAACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTAGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * *
546021 TGAAGACAAATGATCCTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * * *
546086 CCCGCGGTTGTGATGGAGCTAGTTGAAGACAAAAGATCTTACCTTCCTACATTGACAGTGAATCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
** *
546151 AATCGAAGACACAAACCTTGCCTCCCTCGGTTGTGATGGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* * * * *
546197 TAAAGACAACAGATCTTGCCTTCTTGCATTGACAGCGAAGCGGGTCAAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * * * * *
546262 CTCTCAGTTGTGATGGAGCTCGTTAAAGACAAAAGGTCTTGCCTTCCGGCATTAACAGCGAAGTA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * *
546327 GATCGAAGACACAAACCTTGCCTCCCTCGGTTGTGATAGAGCTGGT
131 GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* *
546373 TCAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTG---
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
546435 -CCTC--------T---GCTGGTTGAAGACAACAGATCTTGCCTTCCTGCAATGACAGCGAAGC-
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
546487 GTGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
131 G-GTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
* **
546534 TGAAGACAAAAGATCTTGCCTTCCAGCATTGACAGCGAAGCATATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * * * *
546599 CCCTCGGTTGTGATAGAGCTGGTTGAATACAACAGATCTTGCCTTCTTGCATTGACAGTGAAGCA
66 CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
546664 GGTCGAAGACACAAACCTTGCCT
131 GGTCGAAGACACAAACCTTGCCT
Statistics
Matches: 9265, Mismatches: 768, Indels: 178
0.91 0.08 0.02
Matches are distributed among these distances:
157 1 0.00
158 32 0.00
159 67 0.01
160 2 0.00
161 157 0.02
162 81 0.01
164 2 0.00
165 6 0.00
166 3 0.00
167 7 0.00
168 239 0.03
169 4 0.00
171 4 0.00
172 87 0.01
173 6 0.00
175 136 0.01
176 8412 0.91
177 19 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (176 bp):
TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
CCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
GGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGT
Found at i:539822 original size:74 final size:74
Alignment explanation
Indices: 539696--539844 Score: 244
Period size: 74 Copynumber: 2.0 Consensus size: 74
539686 GGTCGAAGAC
*
539696 ACAAACCTTGCCTCCCTCCGTTGTGATGGAGCTGGTTGAAGGCAAAAAATCTTACCTTCCAGCAT
1 ACAAACCTTGCCTCCCTCCGTTGTGATGGAGCTGGTTGAAGACAAAAAATCTTACCTTCCAGCAT
539761 TGACAGCGA
66 TGACAGCGA
* * * * *
539770 ACAAACCTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCAT
1 ACAAACCTTGCCTCCCTCCGTTGTGATGGAGCTGGTTGAAGACAAAAAATCTTACCTTCCAGCAT
539835 TGACAGCGA
66 TGACAGCGA
539844 A
1 A
539845 GCAGGTCAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (74 bp):
ACAAACCTTGCCTCCCTCCGTTGTGATGGAGCTGGTTGAAGACAAAAAATCTTACCTTCCAGCAT
TGACAGCGA
Found at i:541903 original size:44 final size:44
Alignment explanation
Indices: 541855--541993 Score: 122
Period size: 44 Copynumber: 3.2 Consensus size: 44
541845 AGAAACAAAC
*
541855 CTTGCCTCTTTCGGTTGTGATGGAACTGGTTGAAGACAAAAGAT
1 CTTGCCTCCTTCGGTTGTGATGGAACTGGTTGAAGACAAAAGAT
* * ** * * * *
541899 CTTGCCTTCCTGC-ATTGACA-GCGAAGCAGGTCGAAGACAGAA-AC
1 CTTGCC-TCCTTCGGTTGTGATG-GAA-CTGGTTGAAGACAAAAGAT
* **
541943 CTTGCCTCCCTCGGTTGTGATGGCGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCCTTCGGTTGTGATGGAACTGGTTGAAGACAAAAGAT
541987 CTTGCCT
1 CTTGCCT
541994 TCCTGCATTG
Statistics
Matches: 69, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
43 18 0.26
44 33 0.48
45 18 0.26
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (44 bp):
CTTGCCTCCTTCGGTTGTGATGGAACTGGTTGAAGACAAAAGAT
Found at i:542079 original size:44 final size:44
Alignment explanation
Indices: 542031--542345 Score: 161
Period size: 44 Copynumber: 7.2 Consensus size: 44
542021 AGACAGAAAC
* *
542031 CTTGCCTCCCTCGGTTGTGATCGAGCTGGTAGAAGACAACAGAT
1 CTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGAT
* * * * * ** *
542075 CTTGCCTTCC-CGCATTATCAGGGAAGCAT-GTCAAAGAC-ACA-AA
1 CTTGCCTCCCTCG-GTTGTGATGG-AGC-TGGTTGAAGACAACAGAT
* **
542118 CATTGCCTCCCTCAGTTGTGATGGATTTGGTTGAAGACAACAGAT
1 C-TTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGAT
* * ** * *
542163 CTTGCCTTCCTAC-ATTGACA-GCGAAGC-GAGTCGAAGACAGA-A-AC
1 CTTGCCTCCCT-CGGTTGTGATG-G-AGCTG-GTTGAAGACA-ACAGAT
*
542207 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGAT
1 CTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGAT
* * * * * *
542251 CTTGCCTTCCT--GTAT-TGACAGCGACGCAGGTCGAAGAC-ACAAAC
1 CTTGCCTCCCTCGGT-TGTGA-TG-GA-GCTGGTTGAAGACAACAGAT
* * *
542295 CTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAAAT
1 CTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGAT
542339 CTTGCCT
1 CTTGCCT
542346 TCCTGTATTG
Statistics
Matches: 196, Mismatches: 49, Indels: 52
0.66 0.16 0.18
Matches are distributed among these distances:
42 7 0.04
43 39 0.20
44 104 0.53
45 39 0.20
46 7 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (44 bp):
CTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGAT
Found at i:542244 original size:43 final size:42
Alignment explanation
Indices: 542195--542335 Score: 126
Period size: 43 Copynumber: 3.2 Consensus size: 42
542185 GAAGCGAGTC
542195 GAAGACAGAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTT
1 GAAGACA-AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTT
* * * * *
542238 GAAGACAACAGATCTTGCCT-TC-CTGTAT-TGACAGCGACGCAGGTC
1 GAAGACAA-A-ACCTTGCCTCTCTCGGT-TGTGA-TG-GA-GCTGGTT
*
542283 GAAGACACAAACCTTGCCTCCCTCGGTTGTGATGGAGCTGGTT
1 GAAGACA-AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTT
*
542326 GAAGATAAAA
1 GAAGACAAAA
542336 AATCTTGCCT
Statistics
Matches: 76, Mismatches: 12, Indels: 21
0.70 0.11 0.19
Matches are distributed among these distances:
42 10 0.13
43 23 0.30
44 20 0.26
45 16 0.21
46 7 0.09
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (42 bp):
GAAGACAAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTT
Found at i:542387 original size:44 final size:43
Alignment explanation
Indices: 542339--543445 Score: 318
Period size: 44 Copynumber: 25.2 Consensus size: 43
542329 GATAAAAAAT
*
542339 CTTGCCTTCCTGTATTGACAGCGAAGGAGGACAAATACACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGGACAAATACACAAAC
* * ** * *** * *
542383 CTTGCCTCTCTTGGTTGGGATG-G-AGCTGGTTGAATACAACAGAT
1 CTTGCCT-TCCTGATTGACA-GCGAAGCAGGACAAATAC-ACAAAC
542427 CTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGGACAAATACACAAAC
* * ** * *** * * *
542471 CTTGCCTCTCTTGGTTGGGATG-G-AGCTGGTTGAAGACAACAGAT
1 CTTGCCT-TCCTGATTGACA-GCGAAGCAGGACAAATAC-ACAAAC
*
542515 TTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGGACAAATACACAAAC
* * ** * *** * * *
542559 CTTGCCTCTCTTGGTTGGGATG-G-AGCTGGTTGAAGACAACAGAT
1 CTTGCCT-TCCTGATTGACA-GCGAAGCAGGACAAATAC-ACAAAC
*
542603 TTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGGACAAATACACAAAC
* * ** * *** * * *
542647 CTTGCCTCTCTTGGTTGGGATG-G-AGCTGGTTGAAGACAACAGAT
1 CTTGCCT-TCCTGATTGACA-GCGAAGCAGGACAAATAC-ACAAAC
*
542691 TTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGGACAAATACACAAAC
* * ** * *** * * *
542735 CTTGCCTCTCTTGGTTGGGATG-G-AGCTGGTTGAAGACAACAGAT
1 CTTGCCT-TCCTGATTGACA-GCGAAGCAGGACAAATAC-ACAAAC
*
542779 TTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGGACAAATACACAAAC
* * ** * *** * * *
542823 CTTGCCTCTCTTGGTTGGGATG-G-AGCTGGTTGAAGACAACAGAT
1 CTTGCCT-TCCTGATTGACA-GCGAAGCAGGACAAATAC-ACAAAC
*
542867 TTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGGACAAATACACAAAC
* * ** * *** * * *
542911 CTTGCCTCTCTTGGTTGGGATG-G-AGCTGGTTGAAGACAACAGAT
1 CTTGCCT-TCCTGATTGACA-GCGAAGCAGGACAAATAC-ACAAAC
*
542955 TTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGGACAAATACACAAAC
* * ** * *** * * *
542999 CTTGCCTCTCTTGGTTGGGATG-G-AGCTGGTTGAAGACAACAGAT
1 CTTGCCT-TCCTGATTGACA-GCGAAGCAGGACAAATAC-ACAAAC
*
543043 TTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGGACAAATACACAAAC
* * ** * *** * * *
543087 CTTGCCTCTCTTGGTTGGGATG-G-AGCTGGTTGAAGACAACAGAT
1 CTTGCCT-TCCTGATTGACA-GCGAAGCAGGACAAATAC-ACAAAC
*
543131 TTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGGACAAATACACAAAC
* * ** * *** * * *
543175 CTTGCCTCTCTTGGTTGGGATG-G-AGCTGGTTGAAGACAACAGAT
1 CTTGCCT-TCCTGATTGACA-GCGAAGCAGGACAAATAC-ACAAAC
*
543219 TTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGGACAAATACACAAAC
* * ** * *** * * *
543263 CTTGCCTCTCTTGGTTGGGATG-G-AGCTGGTTGAAGACAACAGAT
1 CTTGCCT-TCCTGATTGACA-GCGAAGCAGGACAAATAC-ACAAAC
*
543307 TTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGGACAAATACACAAAC
* * ** * *** * * *
543351 CTTGCCTCTCTTGGTTGGGATG-G-AGCTGGTTGAAGACAACAGAT
1 CTTGCCT-TCCTGATTGACA-GCGAAGCAGGACAAATAC-ACAAAC
*
543395 TTTGCCTTCCTGCATTGACAGCGAAGCAGGACAAATACACAAAC
1 CTTGCCTTCCTG-ATTGACAGCGAAGCAGGACAAATACACAAAC
543439 CTTGCCT
1 CTTGCCT
543446 CTCTTGGTTG
Statistics
Matches: 706, Mismatches: 285, Indels: 144
0.62 0.25 0.13
Matches are distributed among these distances:
43 168 0.24
44 369 0.52
45 169 0.24
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (43 bp):
CTTGCCTTCCTGATTGACAGCGAAGCAGGACAAATACACAAAC
Found at i:546486 original size:73 final size:73
Alignment explanation
Indices: 546367--546520 Score: 258
Period size: 73 Copynumber: 2.1 Consensus size: 73
546357 TTGTGATAGA
* *
546367 GCTGGTTCAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAG-GTCGAAGACACAAAC
1 GCTGGTTGAAGACAACAGATCTTGCCTTCCTGCAATGACAGCGAAGC-GTGTCGAAGACACAAAC
546431 CTTGCCTCT
65 CTTGCCTCT
546440 GCTGGTTGAAGACAACAGATCTTGCCTTCCTGCAATGACAGCGAAGCGTGTCGAAGACACAAACC
1 GCTGGTTGAAGACAACAGATCTTGCCTTCCTGCAATGACAGCGAAGCGTGTCGAAGACACAAACC
546505 TTGCCTCT
66 TTGCCTCT
546513 -CTCGGTTG
1 GCT-GGTTG
546521 TGATGGAGCT
Statistics
Matches: 77, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
72 3 0.04
73 74 0.96
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (73 bp):
GCTGGTTGAAGACAACAGATCTTGCCTTCCTGCAATGACAGCGAAGCGTGTCGAAGACACAAACC
TTGCCTCT
Found at i:546541 original size:43 final size:43
Alignment explanation
Indices: 546492--546625 Score: 105
Period size: 43 Copynumber: 3.1 Consensus size: 43
546482 GAAGCGTGTC
546492 GAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTT
1 GAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTT
* * ** * * *
546535 GAAGACAAAAGATCTTGCCT-TC-CAGCAT-TGACAGCGAAGCAT-ATC
1 GAAGACACAA-ACCTTGCCTCTCTC-GGTTGTGA-TG-G-AGC-TGGTT
* *
546580 GAAGACACAAACCTTGCCTCCCTCGGTTGTGATAGAGCTGGTT
1 GAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTT
546623 GAA
1 GAA
546626 TACAACAGAT
Statistics
Matches: 65, Mismatches: 16, Indels: 20
0.64 0.16 0.20
Matches are distributed among these distances:
42 5 0.08
43 21 0.32
44 18 0.28
45 16 0.25
46 5 0.08
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (43 bp):
GAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTT
Found at i:546552 original size:161 final size:161
Alignment explanation
Indices: 546287--546599 Score: 486
Period size: 161 Copynumber: 1.9 Consensus size: 161
546277 GAGCTCGTTA
* *
546287 AAGACAAAAGGTCTTGCCTTCCGGCATTAACAGCGAAGTAGATCGAAGACACAAACCTTGCCTCC
1 AAGACAAAAGATCTTGCCTTCCGGCAATAACAGCGAAGTAGATCGAAGACACAAACCTTGCCTCC
* * *
546352 CTCGGTTGTGATAGAGCTGGTTCAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGG
66 CTCGGTTGTGATAGAGCTGGTTCAAGACAAAAGATCTTGCCTTCCAGCATTGACAGCGAAGCAGA
546417 TCGAAGACACAAACCTTGCCTCTGCTGGTTG
131 TCGAAGACACAAACCTTGCCTCTGCTGGTTG
* * *
546448 AAGACAACAGATCTTGCCTTCCTGCAATGACAGCGAAGCGT-G-TCGAAGACACAAACCTTGCCT
1 AAGACAAAAGATCTTGCCTTCCGGCAATAACAGCGAA--GTAGATCGAAGACACAAACCTTGCCT
* * *
546511 CTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCAGCATTGACAGCGAAGCA
64 CCCTCGGTTGTGATAGAGCTGGTTCAAGACAAAAGATCTTGCCTTCCAGCATTGACAGCGAAGCA
*
546576 TATCGAAGACACAAACCTTGCCTC
129 GATCGAAGACACAAACCTTGCCTC
546600 CCTCGGTTGT
Statistics
Matches: 138, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
161 135 0.98
162 1 0.01
163 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (161 bp):
AAGACAAAAGATCTTGCCTTCCGGCAATAACAGCGAAGTAGATCGAAGACACAAACCTTGCCTCC
CTCGGTTGTGATAGAGCTGGTTCAAGACAAAAGATCTTGCCTTCCAGCATTGACAGCGAAGCAGA
TCGAAGACACAAACCTTGCCTCTGCTGGTTG
Found at i:546589 original size:88 final size:88
Alignment explanation
Indices: 546440--546686 Score: 395
Period size: 88 Copynumber: 2.8 Consensus size: 88
546430 CCTTGCCTCT
* *
546440 GCTGGTTGAAGACAACAGATCTTGCCTTCCTGCAATGACAGCGAAGCGTGTCGAAGACACAAACC
1 GCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCATGTCGAAGACACAAACC
* *
546505 TTGCCTCTCTCGGTTGTGATGGA
66 TTGCCTCCCTCGGTTGTGATAGA
* * *
546528 GCTGGTTGAAGACAAAAGATCTTGCCTTCCAGCATTGACAGCGAAGCATATCGAAGACACAAACC
1 GCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCATGTCGAAGACACAAACC
546593 TTGCCTCCCTCGGTTGTGATAGA
66 TTGCCTCCCTCGGTTGTGATAGA
* * * *
546616 GCTGGTTGAATACAACAGATCTTGCCTTCTTGCATTGACAGTGAAGCAGGTCGAAGACACAAACC
1 GCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCATGTCGAAGACACAAACC
546681 TTGCCT
66 TTGCCT
Statistics
Matches: 145, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 145 1.00
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.24
Consensus pattern (88 bp):
GCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCATGTCGAAGACACAAACC
TTGCCTCCCTCGGTTGTGATAGA
Found at i:546633 original size:249 final size:249
Alignment explanation
Indices: 546191--546686 Score: 839
Period size: 249 Copynumber: 2.0 Consensus size: 249
546181 TTGTGATGGA
* *
546191 GCTGGTTAAAGACAACAGATCTTGCCTTCTTGCATTGACAGCGAAGCGGGTCAAAGACACAAACC
1 GCTGGTTAAAGACAACAGATCTTGCCTTCCTGCAATGACAGCGAAGCGGGTCAAAGACACAAACC
* *
546256 TTGCCTCTCTCAGTTGTGATGGAGCTCGTTAAAGACAAAAGGTCTTGCCTTCCGGCATTAACAGC
66 TTGCCTCTCTCAGTTGTGATGGAGCTCGTTAAAGACAAAAGATCTTGCCTTCCAGCATTAACAGC
*
546321 GAAGTAGATCGAAGACACAAACCTTGCCTCCCTCGGTTGTGATAGAGCTGGTTCAAGACAACAGA
131 GAAGCAGATCGAAGACACAAACCTTGCCTCCCTCGGTTGTGATAGAGCTGGTTCAAGACAACAGA
546386 TCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
196 TCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
* * *
546440 GCTGGTTGAAGACAACAGATCTTGCCTTCCTGCAATGACAGCGAAGCGTGTCGAAGACACAAACC
1 GCTGGTTAAAGACAACAGATCTTGCCTTCCTGCAATGACAGCGAAGCGGGTCAAAGACACAAACC
* * * *
546505 TTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCAGCATTGACAGC
66 TTGCCTCTCTCAGTTGTGATGGAGCTCGTTAAAGACAAAAGATCTTGCCTTCCAGCATTAACAGC
* * *
546570 GAAGCATATCGAAGACACAAACCTTGCCTCCCTCGGTTGTGATAGAGCTGGTTGAATACAACAGA
131 GAAGCAGATCGAAGACACAAACCTTGCCTCCCTCGGTTGTGATAGAGCTGGTTCAAGACAACAGA
* *
546635 TCTTGCCTTCTTGCATTGACAGTGAAGCAGGTCGAAGACACAAACCTTGCCT
196 TCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
Statistics
Matches: 230, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
249 230 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (249 bp):
GCTGGTTAAAGACAACAGATCTTGCCTTCCTGCAATGACAGCGAAGCGGGTCAAAGACACAAACC
TTGCCTCTCTCAGTTGTGATGGAGCTCGTTAAAGACAAAAGATCTTGCCTTCCAGCATTAACAGC
GAAGCAGATCGAAGACACAAACCTTGCCTCCCTCGGTTGTGATAGAGCTGGTTCAAGACAACAGA
TCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCT
Found at i:546684 original size:44 final size:44
Alignment explanation
Indices: 546460--546686 Score: 126
Period size: 44 Copynumber: 5.2 Consensus size: 44
546450 GACAACAGAT
* *
546460 CTTGCCTTCCTGCAATGACAGCGAAGC-GTGTCGAAGACACAAAC
1 CTTGCCTTCCTGCATTGACAGTGAAGCAG-GTCGAAGACACAAAC
* ** * * * * *
546504 CTTGCC-TCTCT-CGGTTGTGA-TGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTTC-CTGC-ATTGACAGTGAAGCAGGTCGAAGACACAA-AC
* * **
546548 CTTGCCTTCCAGCATTGACAGCGAAGCATATCGAAGACACAAAC
1 CTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACAAAC
* * ** * * * * *
546592 CTTGCCTCCCT-CGGTTGTGA-T-AGAGCTGGTTGAATACAACAGAT
1 CTTGCCTTCCTGC-ATTGACAGTGA-AGCAGGTCGAAGAC-ACAAAC
*
546636 CTTGCCTTCTTGCATTGACAGTGAAGCAGGTCGAAGACACAAAC
1 CTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACAAAC
546680 CTTGCCT
1 CTTGCCT
Statistics
Matches: 126, Mismatches: 44, Indels: 26
0.64 0.22 0.13
Matches are distributed among these distances:
42 1 0.01
43 28 0.22
44 66 0.52
45 30 0.24
46 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (44 bp):
CTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACAAAC
Done.