Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold766

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6901
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.32

Warning! 210 characters in sequence are not A, C, G, or T


Found at i:1770 original size:27 final size:27

Alignment explanation


    Indices: 1713--1770  Score: 80
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1703 ATGATGTAGC

                                 *    *
       1713 AAAAAAGAATAAAAGAATAATTACTCG
          1 AAAAAAGAATAAAAGAATAATGACTCA

                               *  *    
       1740 AAAAAAGAATAAAAGAATACTGGCTCA
          1 AAAAAAGAATAAAAGAATAATGACTCA

                
       1767 AAAA
          1 AAAA

       1771 TGCATACGAA


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.64, C:0.09, G:0.12, T:0.16


Consensus pattern (27 bp):   
AAAAAAGAATAAAAGAATAATGACTCA
Done.