Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3015

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 486

Length: 810
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26


Found at i:106 original size:15 final size:15

Alignment explanation


    Indices: 86--139  Score: 90
    Period size: 15  Copynumber: 3.6  Consensus size: 15

         76 AACAGGAAAT

                           
         86 ATTTCCATGTGGCTG
          1 ATTTCCATGTGGCTG

                  *        
        101 ATTTCCGTGTGGCTG
          1 ATTTCCATGTGGCTG

                          *
        116 ATTTCCATGTGGCTT
          1 ATTTCCATGTGGCTG

                     
        131 ATTTCCATG
          1 ATTTCCATG

        140 AAAATTTTTC


Statistics
Matches: 36,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  15   36  1.00

ACGTcount: A:0.13, C:0.20, G:0.24, T:0.43


Consensus pattern (15 bp):   
ATTTCCATGTGGCTG

Found at i:233 original size:33 final size:33

Alignment explanation


    Indices: 131--226  Score: 167
    Period size: 33  Copynumber: 2.9  Consensus size: 33

        121 CATGTGGCTT

                  *                          
        131 ATTTCCATGAAAATTTTTCATGGAAACGAAATC
          1 ATTTCCGTGAAAATTTTTCATGGAAACGAAATC

                                             
        164 ATTTCCGTGAAAATTTTTCATGGAAACGAAATC
          1 ATTTCCGTGAAAATTTTTCATGGAAACGAAATC

                      *                    
        197 ATTTCCGTGACAATTTTTCATGGAAA-GAAA
          1 ATTTCCGTGAAAATTTTTCATGGAAACGAAA

        227 ACCATTTGCA


Statistics
Matches: 61,  Mismatches: 2, Indels: 1
        0.95            0.03        0.02

Matches are distributed among these distances:
  32    4  0.07
  33   57  0.93

ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33


Consensus pattern (33 bp):   
ATTTCCGTGAAAATTTTTCATGGAAACGAAATC
Done.