Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3138

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 475

Length: 793
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35


Found at i:697 original size:27 final size:27

Alignment explanation


    Indices: 665--716  Score: 77
    Period size: 27  Copynumber: 1.9  Consensus size: 27

        655 TCTTACTTTT

                  *          *         
        665 AAATAATTAATTACCAATTTATTTAAC
          1 AAATAAATAATTACCAACTTATTTAAC

                          *          
        692 AAATAAATAATTACTAACTTATTTA
          1 AAATAAATAATTACCAACTTATTTA

        717 TTTGTTTATT


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  27   22  1.00

ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40


Consensus pattern (27 bp):   
AAATAAATAATTACCAACTTATTTAAC
Done.