genome.fa.s2568.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold504
Parameters: 2 7 7 80 10 50 1000
Length:  117106

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--444	21	21.1	21	82	3	482	25	1	26	46	1.61
411--471	28	2.2	28	85	2	79	21	0	32	45	1.52
684--764	17	4.8	16	75	18	67	46	2	4	45	1.37
697--1069	114	3.4	114	85	6	507	39	8	11	40	1.70
863--1069	104	2.0	104	91	0	333	39	8	12	39	1.73
1077--1802	21	34.2	21	79	8	718	25	0	27	45	1.59
2062--2332	114	2.4	114	93	0	452	40	8	10	40	1.70
2339--3695	21	63.0	21	78	10	1059	26	0	26	47	1.57
2485--2540	27	2.1	27	82	0	67	25	0	28	46	1.53
2681--2744	28	2.3	28	81	13	71	21	0	29	48	1.51
3829--3875	21	2.2	20	79	17	51	4	25	29	40	1.75
5374--5408	15	2.3	15	95	0	61	62	14	0	22	1.31
7308--7418	50	2.2	50	80	3	125	24	27	21	27	1.99
7503--7686	50	3.7	50	70	2	145	23	27	22	27	1.99
7337--7866	267	2.0	267	87	0	754	26	26	20	27	1.99
7766--7874	50	2.2	50	79	0	119	26	20	22	30	1.98
19800--19834	15	2.3	15	95	0	61	62	14	0	22	1.31
19897--19945	25	1.9	26	83	4	64	63	2	8	26	1.34
21641--21678	20	1.9	20	84	10	51	57	7	0	34	1.28
22666--22729	11	5.7	11	87	9	85	40	0	31	28	1.57
26254--26287	16	2.1	16	88	5	50	29	0	0	70	0.87
27025--27080	18	3.1	18	70	10	51	33	1	1	62	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42498--42531	3	11.3	3	100	0	68	64	0	0	35	0.94
52087--52176	46	1.9	47	88	2	137	36	14	13	35	1.85
54002--54041	2	20.0	2	89	0	62	50	0	0	50	1.00
55345--55452	54	2.0	54	96	0	198	44	2	10	42	1.52
55483--55516	15	2.3	15	90	5	52	26	0	26	47	1.53
55521--55585	14	4.6	14	80	3	69	18	0	46	35	1.50
55513--55578	21	3.1	22	77	14	66	18	0	42	39	1.50
55542--55614	7	10.3	7	83	2	65	17	0	43	38	1.50
55525--55614	28	3.2	27	76	14	83	16	0	45	37	1.48
55534--55617	29	2.9	29	78	1	98	19	0	41	39	1.51
60187--60216	15	2.0	15	93	0	51	20	0	36	43	1.52
60224--60285	21	2.9	21	85	7	72	24	0	35	40	1.55
60275--60313	7	5.6	7	96	0	69	28	0	15	56	1.40
60271--60320	21	2.4	21	82	0	73	26	0	24	50	1.50
61880--61913	13	2.6	13	95	0	59	23	32	14	29	1.94
63034--63103	31	2.3	31	95	2	124	22	17	22	37	1.94
63647--63762	41	2.8	42	81	12	139	29	12	24	34	1.91
63619--63900	143	2.0	140	87	2	402	30	10	20	37	1.87
63851--63939	43	2.1	42	93	0	133	22	15	31	30	1.95
65808--65849	19	2.2	19	91	0	66	45	21	21	11	1.84
66517--66584	12	5.8	12	72	17	54	38	1	1	58	1.16
66544--66584	6	7.0	6	89	10	59	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67007--67054	25	1.9	25	86	0	69	45	6	6	41	1.54
68339--68382	18	2.4	18	88	0	61	13	2	43	40	1.57
68965--68994	7	4.3	7	100	0	60	73	0	26	0	0.84
75848--75893	14	3.3	14	93	0	83	41	0	2	56	1.11
79342--79430	25	3.1	30	79	15	116	25	24	6	42	1.79
84093--84175	44	1.9	43	90	2	130	53	4	6	36	1.47
85900--85985	26	3.2	26	63	18	66	29	3	25	41	1.72
85893--86005	56	2.0	56	100	0	226	28	3	24	43	1.71
116311--116351	19	2.1	19	86	9	55	9	4	7	78	1.10
116832--116874	22	2.0	22	90	0	68	23	13	25	37	1.92

Tables:   1

The End!