Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1562

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 930

Length: 1550
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37


Found at i:544 original size:13 final size:13

Alignment explanation


    Indices: 526--553  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

        516 AACATGACAT

                         
        526 CAATGAAATGAAA
          1 CAATGAAATGAAA

                         
        539 CAATGAAATGAAA
          1 CAATGAAATGAAA

              
        552 CA
          1 CA

        554 GTTTTCTTTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.61, C:0.11, G:0.14, T:0.14


Consensus pattern (13 bp):   
CAATGAAATGAAA
Done.