Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2313

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 595

Length: 992
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32


Found at i:573 original size:19 final size:19

Alignment explanation


    Indices: 549--586  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        539 TTTAGGAGGG

                      *        
        549 AGCACCAGATTAGGTACCA
          1 AGCACCAGATCAGGTACCA

                               
        568 AGCACCAGATCAGGTACCA
          1 AGCACCAGATCAGGTACCA

        587 GGGTCAAATC


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.37, C:0.29, G:0.21, T:0.13


Consensus pattern (19 bp):   
AGCACCAGATCAGGTACCA
Done.