Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3425

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 449

Length: 749
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35


Found at i:212 original size:50 final size:50

Alignment explanation


    Indices: 83--268  Score: 207
    Period size: 50  Copynumber: 3.7  Consensus size: 50

         73 GATAATAACA

                  *                                     * *     
         83 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCTTGTAC--
          1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG

                                *    *                        
        132 TGCCAATGCCATGTCCCAGATATGGCCTTACATGGGAGTTCTCATATCGG
          1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG

                *  *    *                  **    **      *    
        182 TGCCCATTCCATATCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
          1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG

                  *                              
        232 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
          1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA

        269 CCTCATTCCT


Statistics
Matches: 113,  Mismatches: 21, Indels: 5
        0.81            0.15        0.04

Matches are distributed among these distances:
  48    4  0.04
  49   38  0.34
  50   71  0.63

ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27


Consensus pattern (50 bp):   
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG

Done.