Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1895

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 733

Length: 1222
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30


Found at i:1065 original size:26 final size:25

Alignment explanation


    Indices: 1036--1088  Score: 70
    Period size: 26  Copynumber: 2.1  Consensus size: 25

       1026 ATCCGCTTAT

                                      
       1036 GGTCCTCCGACCAACTCAAACTCTAA
          1 GGTCCTCCGACCAACTCAAACTC-AA

                *  *    *            
       1062 GGTCTTCGGACCCACTCAAACTCAA
          1 GGTCCTCCGACCAACTCAAACTCAA

              
       1087 GG
          1 GG

       1089 GACCTTCGAC


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  25    4  0.17
  26   20  0.83

ACGTcount: A:0.28, C:0.36, G:0.17, T:0.19


Consensus pattern (25 bp):   
GGTCCTCCGACCAACTCAAACTCAA
Done.